Back to Long Tests report for BioC 3.20

This page was generated on 2025-02-22 23:55 -0500 (Sat, 22 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4767
palomino8Windows Server 2022 Datacenterx644.4.2 (2024-10-31 ucrt) -- "Pile of Leaves" 4502
merida1macOS 12.7.5 Montereyx86_644.4.2 (2024-10-31) -- "Pile of Leaves" 4525
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-02-22 09:55 -0500 (Sat, 22 Feb 2025)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_20
git_last_commit: b6b4ed9
git_last_commit_date: 2024-10-29 11:09:30 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  WARNINGS  
merida1macOS 12.7.5 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on palomino8

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.10.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
StartedAt: 2025-02-22 16:04:42 -0500 (Sat, 22 Feb 2025)
EndedAt: 2025-02-22 16:06:54 -0500 (Sat, 22 Feb 2025)
EllapsedTime: 131.4 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.2 (2024-10-31 ucrt) -- "Pile of Leaves"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

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Type 'license()' or 'licence()' for distribution details.

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2025-02-22 16:05:29.195][biodb::testContext]
biodb.INFO [2025-02-22 16:05:29.198][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-22 16:05:29.199][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2025-02-22 16:05:29.200][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-22 16:05:29.201][biodb::testContext]
biodb.INFO [2025-02-22 16:05:29.207][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-02-22 16:05:29.210][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-22 16:05:29.217][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:05:29.219][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-22 16:05:29.220][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-22 16:05:29.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.224][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-22 16:05:29.240][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-22 16:05:29.241][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.245][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-22 16:05:29.246][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-22 16:05:29.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.250][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-22 16:05:29.251][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-22 16:05:29.253][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-22 16:05:29.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.257][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-22 16:05:29.258][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-22 16:05:29.259][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-22 16:05:29.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.264][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-22 16:05:29.265][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-22 16:05:29.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.269][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-22 16:05:29.270][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-22 16:05:29.272][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-22 16:05:29.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.276][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-22 16:05:29.277][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-22 16:05:29.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.281][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-22 16:05:29.283][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-22 16:05:29.284][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-22 16:05:29.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.288][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-22 16:05:29.289][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-22 16:05:29.291][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-22 16:05:29.292][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-22 16:05:29.293][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-22 16:05:29.294][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-22 16:05:29.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.299][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-22 16:05:29.300][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-22 16:05:29.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.304][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-22 16:05:29.305][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-22 16:05:29.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.310][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-22 16:05:29.311][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-22 16:05:29.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.315][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-22 16:05:29.316][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-22 16:05:29.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.321][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-22 16:05:29.322][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-22 16:05:29.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.326][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-22 16:05:29.327][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-22 16:05:29.331][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-22 16:05:29.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.335][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-22 16:05:29.337][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-22 16:05:29.338][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-22 16:05:29.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.344][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-22 16:05:29.379][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.393][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-22 16:05:29.394][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.395][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:29.397][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.398][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.399][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.400][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.401][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-22 16:05:29.403][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:29.404][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.405][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-22 16:05:29.406][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:29.407][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.409][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.410][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:05:29.410][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:05:29.410][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:05:29.410][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-22 16:05:29.410][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-22 16:05:29.411][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:05:29.412][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.413][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.414][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:29.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.418][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.419][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.420][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:29.421][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:29.422][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.424][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.425][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-22 16:05:29.427][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.428][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-22 16:05:29.429][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.430][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:29.432][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.433][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.434][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.435][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.436][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-22 16:05:29.437][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:29.439][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.440][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-22 16:05:29.441][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:29.442][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.443][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.445][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:05:29.445][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:05:29.445][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:05:29.445][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-22 16:05:29.445][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-22 16:05:29.446][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:05:29.447][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.448][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.449][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:29.450][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.451][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.453][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.454][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.455][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:29.456][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:29.457][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.458][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.460][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-22 16:05:29.462][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.463][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-22 16:05:29.464][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.465][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:29.467][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.468][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.469][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.470][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.471][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-22 16:05:29.473][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:29.474][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.475][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-22 16:05:29.476][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:29.477][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.478][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.480][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.481][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:05:29.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.484][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:29.485][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.486][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.488][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.489][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.490][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:29.491][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:29.492][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.493][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.495][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-22 16:05:29.497][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.498][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-22 16:05:29.499][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.500][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:29.502][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.503][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.504][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.505][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.506][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-22 16:05:29.507][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:29.509][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.510][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-22 16:05:29.511][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:29.512][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.513][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.515][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.516][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:05:29.517][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.518][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.519][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:29.520][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.521][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.523][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.524][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.525][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:29.526][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:29.527][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.528][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.532][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:05:29.533][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.632][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-22 16:05:29.636][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-22 16:05:29.638][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-22 16:05:29.639][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-22 16:05:29.641][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-22 16:05:29.642][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-22 16:05:29.644][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-22 16:05:29.646][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-22 16:05:29.647][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-22 16:05:29.649][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-22 16:05:29.650][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-22 16:05:29.652][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-22 16:05:29.653][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-22 16:05:29.655][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-22 16:05:29.656][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-22 16:05:29.658][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-22 16:05:29.659][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-22 16:05:29.661][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-22 16:05:29.662][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-22 16:05:29.664][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-22 16:05:29.666][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-22 16:05:29.667][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-22 16:05:29.669][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-22 16:05:29.670][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-22 16:05:29.672][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-22 16:05:29.673][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-22 16:05:29.675][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-22 16:05:29.677][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-22 16:05:29.678][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-22 16:05:29.680][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-22 16:05:29.681][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-22 16:05:29.683][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-22 16:05:29.684][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-22 16:05:29.686][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-22 16:05:29.687][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-22 16:05:29.689][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-22 16:05:29.691][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-22 16:05:29.692][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-22 16:05:29.694][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-22 16:05:29.695][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-22 16:05:29.697][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-22 16:05:29.698][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-22 16:05:29.700][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-22 16:05:29.701][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-22 16:05:29.703][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-22 16:05:29.704][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-22 16:05:29.706][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-22 16:05:29.708][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-22 16:05:29.709][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-22 16:05:29.711][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-22 16:05:29.712][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-22 16:05:29.714][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-22 16:05:29.715][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-22 16:05:29.717][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-22 16:05:29.718][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-22 16:05:29.720][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-22 16:05:29.722][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-22 16:05:29.723][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-22 16:05:29.725][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-22 16:05:29.726][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-22 16:05:29.728][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-22 16:05:29.729][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-22 16:05:29.731][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-22 16:05:29.732][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-22 16:05:29.734][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-22 16:05:29.735][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-22 16:05:29.737][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-22 16:05:29.739][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-22 16:05:29.740][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-22 16:05:29.742][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-22 16:05:29.743][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-22 16:05:29.745][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-22 16:05:29.746][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-22 16:05:29.748][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-22 16:05:29.749][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-22 16:05:29.751][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-22 16:05:29.752][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-22 16:05:29.754][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-22 16:05:29.756][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-22 16:05:29.757][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-22 16:05:29.759][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-22 16:05:29.760][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-22 16:05:29.762][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-22 16:05:29.795][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-22 16:05:29.797][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-02-22 16:05:29.801][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:05:29.808][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.810][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.823][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.882][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:29.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:29.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:29.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:29.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:29.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:29.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:29.943][bdb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-22 16:05:29.952][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-22 16:05:29.954][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.955][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-22 16:05:29.957][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.958][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:29.959][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.960][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.961][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.962][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.964][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-22 16:05:29.965][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:29.966][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.967][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-22 16:05:29.968][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:29.969][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-22 16:05:29.969][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-22 16:05:29.971][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:29.972][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.973][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-22 16:05:29.974][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.975][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.976][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:29.977][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:29.979][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:29.980][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.981][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:29.981][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-22 16:05:29.982][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:29.983][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:29.984][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.985][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:29.987][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-22 16:05:29.989][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.990][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-22 16:05:29.991][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.992][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:29.993][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.995][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.996][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:29.997][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:29.998][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:05:29.999][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:30.000][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.002][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-22 16:05:30.003][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:30.004][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-22 16:05:30.004][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-22 16:05:30.004][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-22 16:05:30.004][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-22 16:05:30.004][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-22 16:05:30.004][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-22 16:05:30.005][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:30.032][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:05:30.034][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-22 16:05:30.035][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:30.036][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:30.037][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:30.039][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:30.040][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:30.041][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:30.042][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:05:30.042][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:05:30.043][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:30.044][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:30.045][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.046][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:30.048][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-22 16:05:30.050][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:30.051][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-22 16:05:30.052][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.053][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:30.055][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.056][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:30.057][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.058][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:30.059][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:05:30.061][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:30.062][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.063][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-22 16:05:30.064][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.065][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:30.067][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:30.068][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:05:30.068][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:05:30.068][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:05:30.069][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-22 16:05:30.070][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:30.071][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:30.072][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:30.074][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:30.075][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:30.076][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:30.077][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:05:30.077][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:05:30.077][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-22 16:05:30.078][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:30.079][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:30.080][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.082][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:05:30.083][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-22 16:05:30.085][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.086][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-22 16:05:30.087][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.088][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:30.090][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.091][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:30.092][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.093][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:30.094][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:05:30.095][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:30.097][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.098][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-22 16:05:30.099][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:30.100][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-22 16:05:30.100][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-22 16:05:30.101][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:30.103][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:30.104][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-22 16:05:30.105][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:30.106][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:30.107][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:30.108][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:30.109][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:30.110][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:30.112][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:05:30.112][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:05:30.112][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-22 16:05:30.113][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:30.114][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:30.115][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:30.116][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:05:30.122][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-22 16:05:30.123][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-22 16:05:30.125][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-22 16:05:30.127][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-22 16:05:30.128][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-22 16:05:30.130][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-22 16:05:30.151][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-02-22 16:05:30.152][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-02-22 16:05:30.155][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-02-22 16:05:30.159][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-02-22 16:05:30.164][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:30.166][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:30.168][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-02-22 16:05:30.169][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:30.170][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:30.171][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2025-02-22 16:05:30.181][biodb::testThat]
biodb.INFO [2025-02-22 16:05:30.183][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-22 16:05:30.184][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:30.185][biodb::testThat]
biodb.TRACE[2025-02-22 16:05:30.191][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2025-02-22 16:05:30.193][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:30.196][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:30.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:30.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:30.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:30.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:30.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:30.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:30.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:30.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.256][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.277][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:30.384][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2025-02-22 16:05:30.387][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:30.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.431][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:30.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:30.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:30.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.557][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.558][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.586][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.596][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.597][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.600][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.615][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.616][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.624][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.646][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2025-02-22 16:05:30.676][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:30.678][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:30.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:30.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:30.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:30.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:30.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:30.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:30.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:30.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.727][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.729][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.733][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:30.786][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-02-22 16:05:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:30.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.819][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:30.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:30.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:30.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:30.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:30.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:30.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:30.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.936][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.955][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.960][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.964][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.969][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.970][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.974][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:30.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.988][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.990][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:30.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:30.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:30.998][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:30.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:31.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:31.002][ef$get] fields variable is a list.
biodb.INFO [2025-02-22 16:05:31.013][biodb::testThat]
biodb.INFO [2025-02-22 16:05:31.014][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-22 16:05:31.015][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:31.017][biodb::testThat]
biodb.DEBUG[2025-02-22 16:05:31.019][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2025-02-22 16:05:31.026][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-22 16:05:31.032][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2025-02-22 16:05:31.033][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2025-02-22 16:05:31.035][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-22 16:05:31.036][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:05:31.038][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:31.039][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:31.040][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:05:31.041][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-22 16:05:31.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:31.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:31.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:31.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:31.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:31.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:31.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:31.067][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-02-22 16:05:31.086][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:31.087][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:31.088][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2025-02-22 16:05:32.345][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2025-02-22 16:05:33.367][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:05:33.370][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2025-02-22 16:05:33.386][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2025-02-22 16:05:33.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:33.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:33.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:33.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:33.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:33.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:33.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:33.421][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2025-02-22 16:05:33.437][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:33.438][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:33.460][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2025-02-22 16:05:34.461][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2025-02-22 16:05:35.454][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:05:35.457][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2025-02-22 16:05:35.462][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2025-02-22 16:05:35.466][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2025-02-22 16:05:35.470][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:05:35.472][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2025-02-22 16:05:35.474][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:35.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:35.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:35.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:35.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:35.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:35.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:35.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:35.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.513][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:35.514][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:35.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:35.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:35.561][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:35.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:35.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:35.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:35.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:35.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:35.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.598][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:35.600][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.604][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:35.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:35.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:35.675][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2025-02-22 16:05:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:35.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:35.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:35.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:35.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:35.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:35.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:35.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:35.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:35.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:05:35.724][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.726][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-22 16:05:35.727][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:35.728][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.737][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.738][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-22 16:05:35.745][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:35.746][biodb::testThat]
biodb.WARN [2025-02-22 16:05:35.764][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-02-22 16:05:35.783][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-02-22 16:05:35.795][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.796][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-22 16:05:35.797][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:35.798][biodb::testThat]
biodb.TRACE[2025-02-22 16:05:35.824][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.829][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:35.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:35.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.839][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:35.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:35.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.845][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:35.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:35.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:35.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.869][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.874][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.879][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:35.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:35.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:35.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:05:35.907][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.908][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-22 16:05:35.910][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:35.911][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.923][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.924][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-22 16:05:35.926][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:35.927][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.937][biodb::testThat]
biodb.INFO [2025-02-22 16:05:35.938][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-22 16:05:35.940][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:35.941][biodb::testThat]
biodb.DEBUG[2025-02-22 16:05:35.946][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-02-22 16:05:37.024][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2025-02-22 16:05:38.079][biodb::testThat]
biodb.INFO [2025-02-22 16:05:38.081][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-22 16:05:38.082][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:38.083][biodb::testThat]
biodb.INFO [2025-02-22 16:05:38.091][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-22 16:05:38.093][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-02-22 16:05:38.094][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-02-22 16:05:38.095][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-22 16:05:38.096][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.099][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.101][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-22 16:05:38.121][biodb::testContext]
biodb.INFO [2025-02-22 16:05:38.122][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-22 16:05:38.123][biodb::testContext] Test context - Gene long tests
biodb.INFO [2025-02-22 16:05:38.124][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-22 16:05:38.126][biodb::testContext]
biodb.INFO [2025-02-22 16:05:38.128][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-02-22 16:05:38.131][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-22 16:05:38.136][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:05:38.137][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-22 16:05:38.138][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-22 16:05:38.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.143][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-22 16:05:38.144][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-22 16:05:38.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.149][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-22 16:05:38.150][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-22 16:05:38.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.154][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-22 16:05:38.155][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-22 16:05:38.157][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-22 16:05:38.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.162][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-22 16:05:38.164][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-22 16:05:38.166][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-22 16:05:38.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.171][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-22 16:05:38.172][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-22 16:05:38.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.176][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-22 16:05:38.178][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-22 16:05:38.179][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-22 16:05:38.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.183][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-22 16:05:38.185][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-22 16:05:38.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.189][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-22 16:05:38.190][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-22 16:05:38.191][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-22 16:05:38.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.196][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-22 16:05:38.197][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-22 16:05:38.198][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-22 16:05:38.199][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-22 16:05:38.201][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-22 16:05:38.202][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-22 16:05:38.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.206][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-22 16:05:38.208][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-22 16:05:38.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.212][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-22 16:05:38.213][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-22 16:05:38.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.218][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-22 16:05:38.219][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-22 16:05:38.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.223][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-22 16:05:38.225][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-22 16:05:38.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.229][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-22 16:05:38.230][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-22 16:05:38.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.235][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-22 16:05:38.236][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-22 16:05:38.239][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-22 16:05:38.240][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.242][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.244][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-22 16:05:38.245][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-22 16:05:38.246][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-22 16:05:38.253][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.257][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-22 16:05:38.259][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.260][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-22 16:05:38.261][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.262][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:38.263][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.265][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.266][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.267][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.268][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-22 16:05:38.269][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:38.271][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.272][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-22 16:05:38.273][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:38.274][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.275][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.277][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:05:38.277][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:05:38.277][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:05:38.277][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-22 16:05:38.277][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-22 16:05:38.278][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:05:38.279][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.280][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.281][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:38.282][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.284][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.285][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.286][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.287][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:38.288][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:38.289][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.291][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.292][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-22 16:05:38.294][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.295][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-22 16:05:38.296][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.298][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:38.299][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.300][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.301][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.302][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.304][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-22 16:05:38.305][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:38.306][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.307][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-22 16:05:38.308][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:38.310][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.311][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.312][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:05:38.312][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:05:38.312][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:05:38.312][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-22 16:05:38.312][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-22 16:05:38.313][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:05:38.315][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.316][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.317][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:38.318][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.320][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.321][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.323][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:38.324][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:38.325][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.326][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.327][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-22 16:05:38.329][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.331][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-22 16:05:38.332][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.333][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:38.334][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.336][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.337][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.338][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.339][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-22 16:05:38.340][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:38.342][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.343][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-22 16:05:38.344][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:38.345][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.346][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.348][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.349][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:05:38.350][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.351][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.352][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:38.353][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.354][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.356][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.357][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.358][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:38.359][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:38.360][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.361][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.363][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-22 16:05:38.365][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.366][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-22 16:05:38.367][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.368][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:38.370][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.371][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.372][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.373][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.379][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-22 16:05:38.381][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:38.382][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.383][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-22 16:05:38.384][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:38.385][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.387][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.388][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.389][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:05:38.390][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.391][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.392][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:38.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.397][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.398][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:38.399][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:38.400][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.402][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.403][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:05:38.404][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.467][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.499][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-22 16:05:38.501][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-22 16:05:38.508][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-22 16:05:38.509][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-22 16:05:38.511][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-22 16:05:38.512][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-22 16:05:38.514][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-22 16:05:38.515][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-22 16:05:38.517][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-22 16:05:38.518][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-22 16:05:38.520][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-22 16:05:38.522][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-22 16:05:38.523][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-22 16:05:38.525][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-22 16:05:38.526][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-22 16:05:38.528][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-22 16:05:38.529][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-22 16:05:38.531][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-22 16:05:38.532][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-22 16:05:38.534][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-22 16:05:38.536][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-22 16:05:38.537][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-22 16:05:38.539][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-22 16:05:38.540][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-22 16:05:38.542][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-22 16:05:38.544][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-22 16:05:38.545][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-22 16:05:38.547][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-22 16:05:38.548][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-22 16:05:38.550][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-22 16:05:38.551][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-22 16:05:38.553][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-22 16:05:38.554][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-22 16:05:38.556][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-22 16:05:38.558][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-22 16:05:38.559][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-22 16:05:38.561][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-22 16:05:38.562][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-22 16:05:38.564][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-22 16:05:38.565][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-22 16:05:38.567][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-22 16:05:38.568][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-22 16:05:38.570][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-22 16:05:38.572][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-22 16:05:38.573][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-22 16:05:38.575][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-22 16:05:38.576][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-22 16:05:38.578][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-22 16:05:38.580][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-22 16:05:38.581][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-22 16:05:38.583][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-22 16:05:38.584][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-22 16:05:38.586][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-22 16:05:38.587][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-22 16:05:38.589][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-22 16:05:38.590][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-22 16:05:38.592][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-22 16:05:38.594][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-22 16:05:38.595][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-22 16:05:38.597][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-22 16:05:38.598][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-22 16:05:38.600][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-22 16:05:38.601][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-22 16:05:38.603][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-22 16:05:38.605][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-22 16:05:38.606][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-22 16:05:38.608][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-22 16:05:38.609][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-22 16:05:38.611][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-22 16:05:38.612][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-22 16:05:38.614][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-22 16:05:38.616][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-22 16:05:38.623][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-22 16:05:38.624][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-22 16:05:38.626][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-22 16:05:38.627][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-22 16:05:38.629][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-22 16:05:38.630][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-22 16:05:38.632][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-22 16:05:38.634][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-22 16:05:38.635][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-22 16:05:38.637][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-22 16:05:38.638][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-22 16:05:38.640][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-22 16:05:38.642][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-02-22 16:05:38.643][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:05:38.644][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.647][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:05:38.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:38.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:38.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:38.779][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:38.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:38.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:38.784][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-22 16:05:38.786][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-22 16:05:38.788][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.790][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-22 16:05:38.791][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.792][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:38.793][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.794][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.795][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.797][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.798][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-22 16:05:38.799][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:38.800][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.801][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-22 16:05:38.803][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:38.804][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-22 16:05:38.804][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-22 16:05:38.805][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.806][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.807][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-22 16:05:38.809][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.810][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.811][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:38.812][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.813][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.814][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.815][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:38.815][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-22 16:05:38.817][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:38.818][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:38.819][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.820][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.821][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-22 16:05:38.823][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.825][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-22 16:05:38.826][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.827][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:38.828][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.829][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.831][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.832][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.833][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:05:38.834][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:38.835][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.837][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-22 16:05:38.838][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:38.839][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-22 16:05:38.839][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-22 16:05:38.839][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-22 16:05:38.839][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-22 16:05:38.839][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-22 16:05:38.839][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-22 16:05:38.840][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.841][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:05:38.843][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-22 16:05:38.844][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.845][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.846][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:38.847][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.848][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.849][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.850][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:05:38.850][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:05:38.852][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:38.853][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:38.854][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.855][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.856][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-22 16:05:38.858][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.860][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-22 16:05:38.861][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.862][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:38.863][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.869][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.871][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.872][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.873][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:05:38.874][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:38.875][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.877][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-22 16:05:38.878][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.879][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:05:38.880][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.882][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:05:38.882][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:05:38.882][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:05:38.883][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-22 16:05:38.884][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.885][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.886][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:38.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.889][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.891][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:05:38.891][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:05:38.891][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-22 16:05:38.892][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:38.893][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:38.894][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.895][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:05:38.897][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-22 16:05:38.899][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.900][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-22 16:05:38.901][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.902][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:05:38.904][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.905][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.906][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.907][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.908][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:05:38.909][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:05:38.911][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.912][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-22 16:05:38.913][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:05:38.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-22 16:05:38.914][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-22 16:05:38.915][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:05:38.917][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:05:38.918][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-22 16:05:38.919][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.920][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.921][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:05:38.922][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:05:38.923][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:05:38.925][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:05:38.926][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:05:38.926][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:05:38.926][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-22 16:05:38.927][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:05:38.928][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:05:38.929][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:05:38.930][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:05:38.932][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-22 16:05:38.933][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-22 16:05:38.935][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-22 16:05:38.937][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-22 16:05:38.939][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-22 16:05:38.940][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-22 16:05:38.948][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2025-02-22 16:05:38.949][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2025-02-22 16:05:38.950][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2025-02-22 16:05:38.952][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-02-22 16:05:38.953][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:38.954][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:38.956][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-02-22 16:05:38.958][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:38.959][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:39.024][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2025-02-22 16:05:39.030][biodb::testThat]
biodb.INFO [2025-02-22 16:05:39.031][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-22 16:05:39.033][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:39.034][biodb::testThat]
biodb.TRACE[2025-02-22 16:05:39.046][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2025-02-22 16:05:39.048][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:39.051][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:39.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:39.054][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:39.055][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:39.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:39.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:39.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:39.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:39.079][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.090][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:39.091][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:39.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.093][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.096][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:39.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:39.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.101][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:39.102][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:39.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.104][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.114][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:39.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:39.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.119][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:39.120][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:39.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.122][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.125][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:39.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:39.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.130][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:39.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:39.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.136][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:39.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:39.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.141][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:39.142][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:39.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.148][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:39.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:39.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:39.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:39.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:39.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:39.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:39.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:39.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:39.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:39.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:39.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:39.212][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2025-02-22 16:05:39.214][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.219][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:39.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:39.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:39.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:39.277][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-22 16:05:39.303][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-02-22 16:05:39.305][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-02-22 16:05:39.306][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-02-22 16:05:39.321][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-22 16:05:39.323][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:39.324][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-22 16:05:39.341][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:39.342][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:39.345][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-22 16:05:39.346][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:39.347][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-22 16:05:39.348][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:39.349][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-22 16:05:39.362][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2025-02-22 16:05:39.364][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2025-02-22 16:05:39.365][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:05:39.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2025-02-22 16:05:39.371][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-22 16:05:39.372][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:05:39.374][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:39.375][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:39.376][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:05:39.377][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-22 16:05:39.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:39.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:39.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:39.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:39.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:39.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:39.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:39.394][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2025-02-22 16:05:39.397][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:39.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:39.400][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2025-02-22 16:05:40.330][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2025-02-22 16:05:41.272][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:05:41.274][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2025-02-22 16:05:41.280][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2025-02-22 16:05:41.283][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2025-02-22 16:05:41.286][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:05:41.288][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:41.290][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:41.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:41.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:41.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:41.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:41.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:41.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:41.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.330][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:41.334][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:41.393][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2025-02-22 16:05:41.394][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.399][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.404][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.414][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:41.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:41.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:41.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:41.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:41.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:41.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:41.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:41.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.559][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:41.560][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.564][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:41.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.584][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:41.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.589][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.594][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.599][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:41.600][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.603][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:41.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.618][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.623][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.628][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.632][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.634][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.637][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:41.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.666][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.668][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.839][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:41.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:41.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.844][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:41.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:41.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.848][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:41.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:41.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.853][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:41.854][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:41.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.857][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.858][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:41.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:41.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:41.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:41.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:41.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:41.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:41.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.886][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:41.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:41.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.890][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.891][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:41.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:41.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:41.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.910][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.915][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.919][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:41.921][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.924][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:41.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.938][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.940][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:41.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.942][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.949][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.950][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:41.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.959][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:41.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:41.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.969][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:41.971][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:41.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.980][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.981][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:41.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:41.991][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:41.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:41.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:41.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.002][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.004][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.014][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:42.015][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:42.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.018][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.036][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2025-02-22 16:05:42.038][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:42.040][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:42.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:42.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:42.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:42.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:42.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:42.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:42.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:42.069][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.082][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:42.083][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:42.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.089][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.094][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:42.096][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:42.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.101][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.107][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:42.108][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:42.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.111][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.113][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:42.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:42.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.119][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:42.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:42.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:42.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:42.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.131][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:42.133][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:42.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.139][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:42.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:42.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:42.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:42.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:42.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:42.211][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2025-02-22 16:05:42.214][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:42.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:42.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.219][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:42.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:42.241][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-22 16:05:42.242][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2025-02-22 16:05:42.291][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:05:42.309][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2025-02-22 16:05:42.316][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-22 16:05:42.318][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:05:42.319][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:42.320][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:42.321][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:05:42.323][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-22 16:05:42.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:42.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:42.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:42.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:42.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:42.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:42.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:42.349][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2025-02-22 16:05:42.352][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:42.353][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:42.355][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2025-02-22 16:05:43.327][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2025-02-22 16:05:44.286][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:05:44.289][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2025-02-22 16:05:44.294][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2025-02-22 16:05:44.298][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2025-02-22 16:05:44.301][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:05:44.303][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:44.304][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:44.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:44.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:44.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:44.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:44.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:44.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:44.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:44.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.339][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:44.340][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.345][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:44.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:44.398][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2025-02-22 16:05:44.407][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.412][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.417][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:44.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.427][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:44.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:44.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.432][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:44.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:44.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:44.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:44.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:44.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:44.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:44.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:44.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.531][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.533][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.550][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.560][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.565][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:44.567][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.569][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.570][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:44.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.585][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:44.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.590][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.599][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:44.601][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.604][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:44.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.619][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.624][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.629][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.633][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.635][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.638][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.667][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.669][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.693][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:44.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:44.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.705][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:44.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:44.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.710][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:44.711][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:44.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:44.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:44.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:44.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:44.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:44.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:44.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.743][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:44.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:44.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:44.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:44.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.764][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:44.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.774][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.779][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:44.780][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.798][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.800][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:44.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.809][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.811][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.820][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.830][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:44.832][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:44.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.841][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.842][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.845][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.851][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:44.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:44.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.861][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.863][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:44.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.872][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.873][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.899][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2025-02-22 16:05:44.901][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:44.903][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:44.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:44.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:44.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:44.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:44.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:44.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:44.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:44.939][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:44.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.951][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:44.953][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:44.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.958][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:44.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:44.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.963][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:44.964][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.966][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.970][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:44.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:44.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.974][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:44.976][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.981][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:44.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.986][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:44.987][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:44.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.993][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:44.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:44.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:44.998][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:44.999][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.002][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.007][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:45.068][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2025-02-22 16:05:45.071][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.076][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:45.095][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-22 16:05:45.096][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2025-02-22 16:05:45.098][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:05:45.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2025-02-22 16:05:45.101][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:05:45.104][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-02-22 16:05:45.105][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:45.107][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:45.108][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:45.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:45.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:45.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:45.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:45.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:45.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:45.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:45.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.138][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:45.139][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.143][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:45.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:45.200][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-02-22 16:05:45.201][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.217][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.222][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:45.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:45.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:45.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:45.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:45.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.330][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.349][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:45.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.354][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.358][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.363][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:45.364][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.368][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:45.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.382][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:45.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.387][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.392][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.396][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:45.398][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.400][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.401][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:45.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.415][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.420][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.425][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.430][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.431][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.435][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.464][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.465][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.483][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:45.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:45.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:45.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:45.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:45.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.497][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:45.498][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:45.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.502][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:45.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:45.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.531][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:45.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:45.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.535][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.550][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:45.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.559][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.564][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:45.566][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.569][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:45.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.583][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.584][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.593][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.594][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.603][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.606][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.613][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:45.614][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:45.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.622][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.624][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.632][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:45.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:45.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.642][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.643][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.652][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.653][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.678][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2025-02-22 16:05:45.680][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:45.682][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:45.683][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:45.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:45.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:45.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:45.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:45.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:45.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:45.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.723][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:45.724][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:45.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.734][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:45.735][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:45.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.745][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:45.746][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.751][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:45.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.756][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:45.757][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:45.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.762][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:45.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.767][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.768][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.775][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:45.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:45.835][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2025-02-22 16:05:45.838][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.842][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:45.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:45.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:45.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:45.862][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-22 16:05:45.863][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2025-02-22 16:05:45.864][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:05:45.866][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2025-02-22 16:05:45.868][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-22 16:05:45.869][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:05:45.871][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:45.872][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:45.873][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:05:45.874][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-22 16:05:45.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:45.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:45.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:45.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:45.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:45.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:45.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:45.891][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2025-02-22 16:05:45.894][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:45.896][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:45.897][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2025-02-22 16:05:46.969][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2025-02-22 16:05:48.022][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:05:48.026][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2025-02-22 16:05:48.031][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2025-02-22 16:05:48.034][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2025-02-22 16:05:48.037][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:05:48.039][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:48.040][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:48.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:48.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:48.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:48.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:48.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:48.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:48.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:48.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.074][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:48.076][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.078][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.080][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:48.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:48.133][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2025-02-22 16:05:48.134][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.139][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:48.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:48.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:48.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:48.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:48.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:48.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.262][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.263][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.288][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.302][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:48.304][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.321][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.331][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.336][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:48.337][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.355][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.360][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.369][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.370][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.374][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.403][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.404][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:48.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.437][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:48.438][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:48.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.442][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:48.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:48.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.461][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:48.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:48.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:48.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.471][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:48.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:48.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.475][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:48.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:48.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.490][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:48.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.495][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.500][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.504][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:48.506][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.509][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:48.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.524][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.525][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.534][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.535][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.547][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.554][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:48.555][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:48.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.564][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.565][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.573][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:48.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:48.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.583][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.584][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.593][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.594][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.632][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2025-02-22 16:05:48.634][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:48.635][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:48.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:48.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:48.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:48.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:48.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:48.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:48.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:48.685][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.686][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.698][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:48.699][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:48.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.706][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.711][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:48.712][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.719][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:48.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:48.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.724][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:48.725][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.732][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:48.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:48.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.737][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:48.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:48.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.745][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:48.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:48.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.750][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.751][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.762][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:48.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:48.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:48.835][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2025-02-22 16:05:48.837][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.842][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:48.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:48.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:48.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:48.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:48.861][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-22 16:05:48.863][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2025-02-22 16:05:48.864][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:05:48.866][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2025-02-22 16:05:48.867][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-22 16:05:48.869][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:05:48.870][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:48.871][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:48.872][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:05:48.874][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-22 16:05:48.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:48.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:48.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:48.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:48.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:48.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:48.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:48.890][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2025-02-22 16:05:48.894][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:48.895][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:48.896][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2025-02-22 16:05:49.870][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2025-02-22 16:05:50.834][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:05:50.837][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2025-02-22 16:05:50.843][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2025-02-22 16:05:50.847][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2025-02-22 16:05:50.850][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:05:50.852][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:50.853][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:50.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:50.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:50.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:50.864][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:50.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:50.867][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:50.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.895][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:50.896][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:50.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.901][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:50.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:50.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:50.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:50.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:50.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:50.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:50.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:50.958][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2025-02-22 16:05:50.959][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:50.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.964][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:50.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.970][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:50.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:50.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.980][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:50.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:50.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:50.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:50.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:50.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.092][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.096][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.113][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:51.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.124][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.129][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:51.130][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.134][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:51.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.149][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.154][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.165][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:51.166][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.185][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.190][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.204][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.206][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.210][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.241][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.243][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.269][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:51.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:51.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:51.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.285][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:51.286][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:51.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:51.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:51.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:51.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:51.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.321][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:51.322][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:51.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.326][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:51.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:51.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.351][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.356][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:51.358][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.360][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:51.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.376][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.378][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.387][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.388][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.398][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.409][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:51.410][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:51.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.420][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.421][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.431][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:51.432][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.435][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.442][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.443][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.452][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.454][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.471][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2025-02-22 16:05:51.473][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:51.475][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:51.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:51.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:51.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:51.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:51.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:51.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:51.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:51.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.501][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.510][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:51.512][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:51.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.516][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:51.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.521][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:51.523][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:51.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.532][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:51.534][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.536][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.538][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:51.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.543][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:51.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:51.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.547][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:51.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.554][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.555][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:51.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:51.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:51.622][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2025-02-22 16:05:51.625][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.630][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:51.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:51.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:51.649][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-22 16:05:51.651][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2025-02-22 16:05:51.652][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:05:51.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2025-02-22 16:05:51.655][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-22 16:05:51.657][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:05:51.658][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:51.659][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:51.661][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:05:51.662][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-22 16:05:51.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:51.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:51.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:51.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:51.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:51.677][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:51.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:51.679][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2025-02-22 16:05:51.683][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:51.684][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:51.685][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2025-02-22 16:05:52.766][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2025-02-22 16:05:53.782][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:05:53.785][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2025-02-22 16:05:53.791][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2025-02-22 16:05:53.795][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2025-02-22 16:05:53.798][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:05:53.800][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:53.801][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:53.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:53.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:53.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:53.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:53.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:53.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:53.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:53.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.840][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:53.841][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:53.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:53.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:53.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:53.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:53.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:53.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:53.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:53.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:53.907][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2025-02-22 16:05:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:53.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.912][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:53.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:53.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.917][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:53.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:53.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.922][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:53.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:53.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.927][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:53.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:53.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:53.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:53.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.936][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:53.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:53.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:53.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:53.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:53.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:53.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:53.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:53.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.030][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.031][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.049][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.063][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:54.064][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.068][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:54.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:54.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.087][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.097][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:54.098][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.100][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:54.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.116][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.125][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.130][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.131][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.134][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.135][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.164][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.165][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:54.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:54.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.196][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.203][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:54.204][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:54.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:54.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:54.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:54.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.240][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:54.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:54.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:54.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:54.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.259][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.264][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.274][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:54.275][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:54.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.293][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.294][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.303][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.304][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.318][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.328][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:54.329][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:54.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.338][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.339][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.347][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:54.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:54.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.357][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.359][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.367][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.368][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.385][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2025-02-22 16:05:54.387][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:54.389][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:54.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:54.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:54.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:54.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:54.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:54.401][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:54.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:54.412][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.423][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:54.424][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:54.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.428][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:54.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:54.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.433][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:54.434][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:54.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:54.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.444][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:54.445][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.449][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:54.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:54.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.454][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:54.455][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:54.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.460][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:54.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:54.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.465][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.466][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:54.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:54.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:54.530][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2025-02-22 16:05:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.537][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:54.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:54.556][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-22 16:05:54.557][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2025-02-22 16:05:54.559][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:05:54.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2025-02-22 16:05:54.562][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-22 16:05:54.563][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:05:54.565][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:54.566][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:05:54.567][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:05:54.568][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-22 16:05:54.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:54.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:54.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:54.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:54.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:54.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:54.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:05:54.585][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2025-02-22 16:05:54.588][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:54.589][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:54.591][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2025-02-22 16:05:55.617][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2025-02-22 16:05:56.651][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:05:56.653][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2025-02-22 16:05:56.659][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2025-02-22 16:05:56.662][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2025-02-22 16:05:56.665][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:05:56.667][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:56.668][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-22 16:05:56.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:56.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:56.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:56.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:56.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:56.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:56.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:56.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.702][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:56.704][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:56.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.708][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:56.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:56.762][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2025-02-22 16:05:56.764][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:56.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.778][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:56.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.783][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:56.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:56.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.788][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:56.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:56.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.793][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:56.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:56.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:56.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:56.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:56.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.895][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:56.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:56.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.919][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:56.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:56.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.923][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:56.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:56.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.928][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:56.930][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:56.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:56.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:56.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:56.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.952][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:56.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:56.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:56.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.962][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:56.963][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:56.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.982][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:56.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.987][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:56.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:56.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:56.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:56.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:56.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:56.996][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:56.998][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:56.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.001][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:57.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:57.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.030][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.031][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.049][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.059][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.064][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.065][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.068][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.069][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:57.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:57.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:57.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:57.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:57.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.098][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:57.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:57.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.102][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.103][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:57.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:57.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.117][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:57.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.122][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.127][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.132][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:57.133][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-22 16:05:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.151][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.153][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.161][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:57.163][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:57.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.172][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.182][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.183][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.193][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.195][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.206][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:57.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:57.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.210][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.216][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.217][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.226][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:57.227][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:57.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.237][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2025-02-22 16:05:57.238][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:05:57.240][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:57.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:57.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:57.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:57.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:57.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:57.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:57.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:57.256][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.258][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.266][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.268][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.271][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.276][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:57.278][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:57.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.281][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:57.283][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:57.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.291][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:57.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:57.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.296][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:57.298][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:57.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:57.355][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2025-02-22 16:05:57.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.363][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:05:57.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:57.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:57.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:05:57.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:05:57.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.382][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:57.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:05:57.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.387][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:57.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:05:57.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.480][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.482][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.484][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.500][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:57.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.505][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.509][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.514][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:57.516][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.533][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.538][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.543][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.548][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.549][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.552][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.553][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.567][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:57.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:57.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.577][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:57.578][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:57.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:57.587][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.588][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:57.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:57.590][ef$get] fields variable is a list.
biodb.INFO [2025-02-22 16:05:57.601][biodb::testThat]
biodb.INFO [2025-02-22 16:05:57.602][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-22 16:05:57.604][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:57.605][biodb::testThat]
biodb.DEBUG[2025-02-22 16:05:57.608][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2025-02-22 16:05:57.609][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2025-02-22 16:05:57.611][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2025-02-22 16:05:57.614][cch$loadFileContent] file.exist = [8]: "FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-22 16:05:57.810][loadFileContents] Loaded 7 files from cache: [7]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2025-02-22 16:05:57.811][conn$getEntryContent] 7 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:05:57.813][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:05:57.814][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:05:57.815][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:05:57.816][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-22 16:05:57.823][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.DEBUG[2025-02-22 16:05:57.826][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:57.827][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:57.828][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml".
biodb.TRACE[2025-02-22 16:05:57.926][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml does not exist.
biodb.TRACE[2025-02-22 16:05:57.927][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:05:57.928][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:05:57.930][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833&retmode=xml).
biodb.TRACE[2025-02-22 16:05:58.249][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml"
biodb.DEBUG[2025-02-22 16:05:58.258][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:05:58.260][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2025-02-22 16:05:58.261][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2025-02-22 16:05:58.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:58.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:58.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:58.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:58.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:58.274][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:58.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:58.288][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.290][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.299][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.300][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.305][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.310][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.311][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.316][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.321][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.322][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.327][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.332][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.338][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.343][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.344][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:58.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:58.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:58.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:58.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:58.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:58.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:58.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:58.430][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.441][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.442][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.452][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.453][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.458][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.463][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.464][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.469][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.474][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.475][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.480][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.485][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.486][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.493][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:58.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:58.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:58.543][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:58.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:58.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:58.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:58.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:58.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.587][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.588][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.599][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.600][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.606][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.611][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.612][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.623][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.624][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.627][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.630][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.635][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.637][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.645][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:58.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:58.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:58.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:58.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:58.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:58.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:58.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:58.721][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.733][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.734][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.736][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.744][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.745][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.755][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.756][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.759][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.761][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.766][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.770][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.773][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.778][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.779][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:58.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:58.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:58.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:58.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:58.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:58.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:58.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:58.879][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.883][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.892][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.893][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.900][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:58.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:58.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.905][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.907][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.914][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:58.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:58.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.919][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.920][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.927][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:58.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.932][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.936][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.940][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:58.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:58.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.945][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.947][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.957][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:58.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:58.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:58.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:58.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:59.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:59.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:59.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:59.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:59.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:59.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:59.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:59.037][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.048][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:59.049][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:59.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.054][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:59.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:59.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.059][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:59.060][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:59.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.064][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:59.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:59.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.069][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:59.071][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:59.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.075][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:59.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:59.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.080][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:59.081][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.086][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:59.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.091][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.092][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.097][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:59.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:59.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:59.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:59.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:59.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:59.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:59.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:59.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:59.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:59.166][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.169][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.176][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:59.178][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:59.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.182][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:59.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:59.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.187][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:59.188][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:59.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.193][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:59.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:59.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.200][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:59.202][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:59.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.208][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:59.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:59.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.213][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:59.215][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.219][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:59.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.224][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.225][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:05:59.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:59.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:05:59.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:05:59.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:05:59.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:05:59.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:05:59.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:05:59.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:05:59.291][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.292][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.301][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:59.302][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:59.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.306][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-22 16:05:59.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-22 16:05:59.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.311][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-22 16:05:59.312][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-22 16:05:59.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.316][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:59.317][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:59.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.321][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-22 16:05:59.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-22 16:05:59.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.326][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-22 16:05:59.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.331][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.332][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-22 16:05:59.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-22 16:05:59.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:05:59.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:05:59.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:59.492][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2025-02-22 16:05:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.538][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.559][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.619][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:05:59.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:05:59.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:05:59.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:05:59.659][biodb::testThat]
biodb.INFO [2025-02-22 16:05:59.660][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-22 16:05:59.662][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:05:59.663][biodb::testThat]
biodb.TRACE[2025-02-22 16:05:59.666][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:59.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.670][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:59.672][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2025-02-22 16:05:59.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:59.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:59.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:05:59.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:05:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:05:59.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:05:59.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:05:59.705][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2025-02-22 16:05:59.712][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-02-22 16:05:59.715][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:05:59.717][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:05:59.718][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2025-02-22 16:05:59.805][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2025-02-22 16:05:59.806][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:05:59.808][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:05:59.810][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2025-02-22 16:06:00.685][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:00.687][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2025-02-22 16:06:00.692][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2025-02-22 16:06:00.695][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2025-02-22 16:06:00.717][biodb::testThat]
biodb.INFO [2025-02-22 16:06:00.718][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-22 16:06:00.720][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:00.721][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:00.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:00.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:00.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:00.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:00.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:00.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:00.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:00.775][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-02-22 16:06:00.779][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:00.781][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-02-22 16:06:00.782][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:00.787][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2025-02-22 16:06:00.809][biodb::testThat]
biodb.INFO [2025-02-22 16:06:00.810][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-22 16:06:00.811][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:00.813][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:00.826][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.831][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:00.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:00.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:00.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:00.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:00.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:00.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:00.850][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2025-02-22 16:06:00.851][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.856][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.866][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:00.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:00.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:00.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:00.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:00.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:00.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.887][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:00.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:00.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.894][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.898][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:00.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.903][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:00.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:00.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:00.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:00.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:00.917][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:00.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:00.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:00.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:00.930][biodb::testThat]
biodb.INFO [2025-02-22 16:06:00.931][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-22 16:06:00.932][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:00.933][biodb::testThat]
biodb.INFO [2025-02-22 16:06:00.947][biodb::testThat]
biodb.INFO [2025-02-22 16:06:00.949][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-22 16:06:00.950][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:00.951][biodb::testThat]
biodb.INFO [2025-02-22 16:06:00.962][biodb::testThat]
biodb.INFO [2025-02-22 16:06:00.963][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-22 16:06:00.964][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:00.965][biodb::testThat]
biodb.DEBUG[2025-02-22 16:06:00.970][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2025-02-22 16:06:03.645][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2025-02-22 16:06:06.530][biodb::testThat]
biodb.INFO [2025-02-22 16:06:06.531][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-22 16:06:06.533][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:06.534][biodb::testThat]
biodb.INFO [2025-02-22 16:06:06.542][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-22 16:06:06.544][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2025-02-22 16:06:06.545][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2025-02-22 16:06:06.547][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-02-22 16:06:06.554][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-02-22 16:06:06.555][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-22 16:06:06.556][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:06.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:06.558][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.561][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-22 16:06:06.567][biodb::testContext]
biodb.INFO [2025-02-22 16:06:06.568][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-22 16:06:06.569][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2025-02-22 16:06:06.570][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-22 16:06:06.571][biodb::testContext]
biodb.INFO [2025-02-22 16:06:06.574][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-02-22 16:06:06.576][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-22 16:06:06.581][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:06:06.583][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-22 16:06:06.584][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-22 16:06:06.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.588][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-22 16:06:06.589][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-22 16:06:06.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.594][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-22 16:06:06.595][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-22 16:06:06.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.599][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-22 16:06:06.601][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-22 16:06:06.602][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-22 16:06:06.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.606][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-22 16:06:06.607][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-22 16:06:06.609][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-22 16:06:06.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.613][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-22 16:06:06.614][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-22 16:06:06.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.618][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-22 16:06:06.620][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-22 16:06:06.621][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-22 16:06:06.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.625][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-22 16:06:06.626][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-22 16:06:06.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.631][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-22 16:06:06.632][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-22 16:06:06.633][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-22 16:06:06.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.637][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-22 16:06:06.639][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-22 16:06:06.640][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-22 16:06:06.641][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-22 16:06:06.642][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-22 16:06:06.643][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-22 16:06:06.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.648][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-22 16:06:06.649][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-22 16:06:06.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.653][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-22 16:06:06.655][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-22 16:06:06.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.659][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-22 16:06:06.660][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-22 16:06:06.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.664][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-22 16:06:06.666][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-22 16:06:06.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.670][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-22 16:06:06.671][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-22 16:06:06.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.675][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-22 16:06:06.677][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-22 16:06:06.680][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-22 16:06:06.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.684][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-22 16:06:06.686][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-22 16:06:06.687][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-22 16:06:06.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.691][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-22 16:06:06.693][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.695][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-22 16:06:06.696][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.697][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:06.698][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.699][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.701][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.702][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.703][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-22 16:06:06.704][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:06.705][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.707][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-22 16:06:06.708][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:06.709][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.710][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.711][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:06:06.711][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:06:06.711][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:06:06.711][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-22 16:06:06.711][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-22 16:06:06.713][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:06:06.714][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:06.715][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:06.716][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:06.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:06.718][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:06.719][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.721][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.722][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:06.723][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:06.724][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.725][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.727][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-22 16:06:06.729][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.730][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-22 16:06:06.731][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.732][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:06.733][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.735][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.736][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.737][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.738][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-22 16:06:06.739][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:06.740][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.742][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-22 16:06:06.743][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:06.744][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.745][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.746][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:06:06.746][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:06:06.746][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:06:06.746][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-22 16:06:06.746][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-22 16:06:06.748][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:06:06.749][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:06.750][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:06.751][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:06.752][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:06.753][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:06.754][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.756][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.757][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:06.758][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:06.759][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.760][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.762][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-22 16:06:06.763][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.765][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-22 16:06:06.766][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.767][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:06.768][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.769][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.771][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.772][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.773][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-22 16:06:06.774][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:06.775][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.777][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-22 16:06:06.778][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:06.779][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.780][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.781][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.782][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:06:06.784][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:06.785][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:06.786][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:06.787][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:06.788][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:06.789][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.790][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.792][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:06.793][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:06.794][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.795][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.796][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-22 16:06:06.798][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.799][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-22 16:06:06.801][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.802][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:06.803][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.804][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.805][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.807][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.808][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-22 16:06:06.809][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:06.810][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.811][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-22 16:06:06.813][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:06.814][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.815][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:06.816][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.817][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:06:06.819][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:06.820][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:06.821][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:06.822][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:06.823][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:06.824][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:06.825][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.827][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:06.828][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:06.829][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:06.830][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:06.832][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:06:06.833][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.886][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:06.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:06.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:06.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:06.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:06.935][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-22 16:06:06.936][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-22 16:06:06.938][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-22 16:06:06.940][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-22 16:06:06.941][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-22 16:06:06.943][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-22 16:06:06.944][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-22 16:06:06.946][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-22 16:06:06.947][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-22 16:06:06.949][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-22 16:06:06.951][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-22 16:06:06.952][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-22 16:06:06.954][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-22 16:06:06.955][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-22 16:06:06.957][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-22 16:06:06.958][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-22 16:06:06.960][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-22 16:06:06.962][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-22 16:06:06.963][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-22 16:06:06.965][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-22 16:06:06.966][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-22 16:06:06.968][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-22 16:06:06.969][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-22 16:06:06.971][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-22 16:06:06.973][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-22 16:06:06.974][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-22 16:06:06.976][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-22 16:06:06.977][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-22 16:06:06.979][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-22 16:06:06.980][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-22 16:06:06.982][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-22 16:06:06.983][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-22 16:06:06.985][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-22 16:06:06.987][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-22 16:06:06.988][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-22 16:06:06.990][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-22 16:06:06.991][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-22 16:06:06.993][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-22 16:06:06.994][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-22 16:06:06.996][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-22 16:06:06.998][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-22 16:06:06.999][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-22 16:06:07.001][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-22 16:06:07.002][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-22 16:06:07.004][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-22 16:06:07.005][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-22 16:06:07.007][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-22 16:06:07.009][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-22 16:06:07.010][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-22 16:06:07.012][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-22 16:06:07.013][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-22 16:06:07.015][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-22 16:06:07.016][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-22 16:06:07.018][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-22 16:06:07.020][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-22 16:06:07.021][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-22 16:06:07.023][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-22 16:06:07.024][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-22 16:06:07.026][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-22 16:06:07.027][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-22 16:06:07.029][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-22 16:06:07.031][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-22 16:06:07.032][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-22 16:06:07.034][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-22 16:06:07.035][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-22 16:06:07.037][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-22 16:06:07.038][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-22 16:06:07.040][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-22 16:06:07.041][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-22 16:06:07.043][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-22 16:06:07.045][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-22 16:06:07.046][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-22 16:06:07.048][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-22 16:06:07.049][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-22 16:06:07.051][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-22 16:06:07.052][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-22 16:06:07.054][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-22 16:06:07.056][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-22 16:06:07.057][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-22 16:06:07.059][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-22 16:06:07.060][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-22 16:06:07.062][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-22 16:06:07.063][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-22 16:06:07.065][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-22 16:06:07.067][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-02-22 16:06:07.069][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:06:07.070][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.072][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:07.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:07.205][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-22 16:06:07.207][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-22 16:06:07.210][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.211][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-22 16:06:07.212][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.213][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:07.214][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.215][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.217][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.218][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.219][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-22 16:06:07.220][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:07.221][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.223][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-22 16:06:07.224][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:07.225][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-22 16:06:07.225][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-22 16:06:07.226][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:07.227][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:07.229][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-22 16:06:07.230][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:07.231][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:07.232][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:07.233][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:07.234][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:07.235][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.237][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:06:07.237][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-22 16:06:07.238][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:07.239][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:07.240][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.241][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:07.243][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-22 16:06:07.245][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.246][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-22 16:06:07.247][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.248][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:07.250][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.251][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.252][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.259][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.261][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:06:07.262][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:07.263][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.264][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-22 16:06:07.266][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:07.267][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-22 16:06:07.267][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-22 16:06:07.267][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-22 16:06:07.267][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-22 16:06:07.267][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-22 16:06:07.267][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-22 16:06:07.268][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:07.269][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:06:07.270][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-22 16:06:07.271][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:07.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:07.274][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:07.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:07.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:07.277][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.278][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:07.278][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:06:07.279][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:07.280][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:07.282][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.283][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:07.284][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-22 16:06:07.286][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:07.288][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-22 16:06:07.289][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.290][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:07.291][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.292][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.293][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.295][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.296][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:06:07.297][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:07.298][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.299][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-22 16:06:07.301][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.302][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:07.303][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:07.304][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:06:07.304][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:06:07.304][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:06:07.306][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-22 16:06:07.307][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:07.308][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:07.309][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:07.310][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:07.311][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:07.312][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.314][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:07.314][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:06:07.314][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-22 16:06:07.315][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:07.316][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:07.317][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.318][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:06:07.320][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-22 16:06:07.322][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.323][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-22 16:06:07.324][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.325][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:07.327][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.328][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.329][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.330][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.331][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:06:07.333][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:07.334][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.335][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-22 16:06:07.336][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:07.337][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-22 16:06:07.337][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-22 16:06:07.339][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:07.340][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:07.341][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-22 16:06:07.342][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:07.343][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:07.344][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:07.346][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:07.347][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:07.348][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:07.349][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:07.349][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:06:07.349][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-22 16:06:07.350][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:07.351][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:07.352][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:07.354][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:06:07.355][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-22 16:06:07.357][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-22 16:06:07.358][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-22 16:06:07.360][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-22 16:06:07.362][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-22 16:06:07.364][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-22 16:06:07.371][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-22 16:06:07.372][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2025-02-22 16:06:07.373][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-22 16:06:07.375][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-02-22 16:06:07.377][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-22 16:06:07.378][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-22 16:06:07.380][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-02-22 16:06:07.381][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-22 16:06:07.383][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-22 16:06:07.384][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:06:07.390][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2025-02-22 16:06:07.396][biodb::testThat]
biodb.INFO [2025-02-22 16:06:07.397][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-22 16:06:07.398][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:07.399][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:07.403][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2025-02-22 16:06:07.405][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:06:07.408][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:07.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:07.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:07.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:07.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:07.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:07.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:07.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:07.428][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.438][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.439][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.448][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.449][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.451][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.458][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.459][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.468][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.469][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.472][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.478][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.480][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.488][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:07.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.498][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:07.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:07.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.502][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:07.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:07.510][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:07.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.512][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.519][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:07.520][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:07.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:07.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.529][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:07.530][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:07.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.532][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:07.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:07.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.539][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:07.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:07.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.549][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:07.550][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:07.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.552][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:07.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.559][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:07.560][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:07.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:07.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:07.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.569][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:07.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:07.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.584][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:07.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:07.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.598][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:07.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:07.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:07.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:07.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.627][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:07.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:07.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:07.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:07.711][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2025-02-22 16:06:07.713][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.718][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:07.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:07.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:07.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:07.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.728][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:07.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:07.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:07.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:07.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:07.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:07.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.837][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:07.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:07.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.872][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:07.873][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.877][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:07.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:07.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:07.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.906][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:07.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:07.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:07.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:07.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.930][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:07.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:07.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.940][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:07.941][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:07.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.959][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:07.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:07.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.964][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:07.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:07.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.969][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:07.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:07.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.974][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:07.975][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:07.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.979][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:07.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:07.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:07.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:07.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:07.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.008][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.009][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.042][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.043][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.076][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.077][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.110][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.111][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.151][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.152][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.185][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.186][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.221][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.222][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:08.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:08.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:08.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:08.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.250][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:08.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:08.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.254][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:08.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:08.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:08.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:08.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:08.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:08.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:08.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:08.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:08.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:08.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:08.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.341][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.351][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.353][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.355][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.361][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.363][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.371][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.372][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.381][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.382][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.391][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.392][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.401][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:08.402][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:08.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.405][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:08.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:08.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.415][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.421][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.425][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.431][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:08.432][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:08.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.441][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.444][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:08.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:08.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.470][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.472][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.480][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.482][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.484][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.492][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2025-02-22 16:06:08.493][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:06:08.495][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:08.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:08.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:08.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:08.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:08.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:08.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:08.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:08.512][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.513][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.522][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.523][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.532][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.533][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.542][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.543][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.552][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.553][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.556][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.562][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.563][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.572][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:08.573][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.577][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:08.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.582][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:08.590][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:08.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.593][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:08.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:08.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:08.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:08.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:08.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:08.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.609][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.619][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:08.621][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:08.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.624][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:08.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:08.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.629][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:08.631][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.633][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:08.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.639][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.641][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.649][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:08.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.660][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:08.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:08.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.674][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:08.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:08.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:08.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:08.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:08.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:08.785][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2025-02-22 16:06:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.793][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:08.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:08.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.802][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:08.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:08.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:08.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:08.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:08.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:08.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.817][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:08.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:08.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:08.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.914][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:08.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:08.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.948][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:08.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.978][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.979][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.982][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:08.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:08.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:08.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.012][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.038][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:09.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:09.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.043][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:09.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:09.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.047][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:09.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:09.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.052][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:09.053][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:09.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.056][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.057][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:09.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:09.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.086][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.087][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.119][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:09.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:09.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:09.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:09.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:09.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:09.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:09.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:09.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:09.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:09.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.224][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.226][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.259][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.260][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.262][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.293][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.294][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.326][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.328][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.360][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.361][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:09.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:09.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:09.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:09.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:09.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:09.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.394][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:09.395][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:09.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:09.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:09.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.413][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.423][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.424][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.433][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.435][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.444][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.445][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.466][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.468][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.470][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.477][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.478][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.497][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:09.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:09.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.517][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:09.518][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:09.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.527][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:09.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:09.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.537][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:09.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:09.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.547][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:09.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:09.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.550][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.557][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.558][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.566][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.568][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.570][ef$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:09.581][biodb::testThat]
biodb.INFO [2025-02-22 16:06:09.582][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-22 16:06:09.583][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:09.584][biodb::testThat]
biodb.DEBUG[2025-02-22 16:06:09.587][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2025-02-22 16:06:09.589][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-22 16:06:09.593][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2025-02-22 16:06:09.595][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-02-22 16:06:09.624][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2025-02-22 16:06:09.626][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:09.627][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-22 16:06:09.629][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:09.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:09.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:09.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:09.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:09.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:09.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:09.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:09.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.656][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.657][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.666][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.668][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.676][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.678][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.687][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.688][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.690][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.697][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.698][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.700][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.707][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:09.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:09.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:09.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.717][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:09.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:09.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:09.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:09.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.738][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:09.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.747][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:09.748][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:09.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:09.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.756][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:09.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:09.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.762][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:09.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:09.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.767][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.768][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.770][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:09.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.777][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.778][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:09.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.787][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:09.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.801][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:09.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.816][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:09.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.830][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:09.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:09.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:09.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:09.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:09.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:09.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:09.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:09.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:09.898][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:09.899][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:09.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:09.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:09.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:09.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:09.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:09.914][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:09.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.924][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.925][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:09.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.940][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.941][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:09.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.951][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.952][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.961][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.962][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:09.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.971][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.972][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:09.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.981][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:09.982][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:09.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.986][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:09.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:09.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.991][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.992][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:09.996][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:09.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:10.002][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:10.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:10.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:10.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:10.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:10.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.021][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:10.022][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:10.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.026][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:10.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:10.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.031][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:10.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:10.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.040][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:10.042][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:10.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:10.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:10.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.050][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:10.052][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:10.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:10.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:10.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.060][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:10.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:10.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:10.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:10.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:10.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:10.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.075][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:10.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:10.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:10.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:10.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.090][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:10.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:10.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:10.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:10.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:10.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:10.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.104][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:10.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:10.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:10.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.119][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:10.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:10.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:10.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:10.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:10.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:10.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:10.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:10.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:10.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:10.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:10.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:10.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:10.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:10.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:10.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:10.200][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2025-02-22 16:06:10.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:06:10.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:06:10.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:06:10.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:06:10.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:06:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:06:10.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:06:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:06:10.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:06:10.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:06:10.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.231][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:06:10.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:06:10.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:10.246][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.248][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-22 16:06:10.249][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:10.250][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:10.253][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:10.255][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:10.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.257][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:10.259][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2025-02-22 16:06:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:10.293][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2025-02-22 16:06:10.299][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-22 16:06:10.303][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:10.304][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-22 16:06:10.306][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:10.318][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-02-22 16:06:10.320][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2025-02-22 16:06:10.337][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:10.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:10.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:10.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:10.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.345][ef$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:10.351][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.353][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-22 16:06:10.354][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:10.355][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:10.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:10.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:10.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:10.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:10.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:10.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:10.417][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-22 16:06:10.421][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:10.422][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-22 16:06:10.424][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:10.426][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2025-02-22 16:06:10.448][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.449][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-22 16:06:10.450][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:10.452][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:10.464][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:10.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:10.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.469][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:10.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:10.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:10.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:10.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.479][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:10.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:10.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:10.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:10.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.488][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:10.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:10.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:10.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:10.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.499][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:10.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:10.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.504][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:10.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:10.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:10.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:10.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:10.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:10.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.519][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:10.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:10.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:10.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:10.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:10.529][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:10.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:10.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:10.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:10.541][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.543][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-22 16:06:10.544][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:10.545][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.556][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.557][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-22 16:06:10.558][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:10.560][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.571][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.572][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-22 16:06:10.574][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:10.575][biodb::testThat]
biodb.DEBUG[2025-02-22 16:06:10.579][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2025-02-22 16:06:10.757][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2025-02-22 16:06:10.904][biodb::testThat]
biodb.INFO [2025-02-22 16:06:10.905][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-22 16:06:10.907][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:10.908][biodb::testThat]
biodb.DEBUG[2025-02-22 16:06:10.998][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2025-02-22 16:06:11.083][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:11.084][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:11.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.087][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.091][ef$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:11.094][biodb::testThat]
biodb.INFO [2025-02-22 16:06:11.095][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-02-22 16:06:11.096][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:11.097][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:11.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:11.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:11.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:11.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:11.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.122][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:11.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:11.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:11.220][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-22 16:06:11.224][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.225][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-22 16:06:11.227][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:11.229][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-02-22 16:06:11.311][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-22 16:06:11.314][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-22 16:06:11.317][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:11.319][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2025-02-22 16:06:11.338][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:11.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:11.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:11.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:11.380][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:11.384][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-22 16:06:11.387][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:11.401][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-22 16:06:11.419][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-22 16:06:11.423][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.424][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2025-02-22 16:06:11.426][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:11.454][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2025-02-22 16:06:11.756][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-22 16:06:11.760][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2025-02-22 16:06:11.763][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:11.779][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2025-02-22 16:06:11.808][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-22 16:06:11.811][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.813][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2025-02-22 16:06:11.815][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:11.830][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2025-02-22 16:06:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:11.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:11.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:11.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:11.882][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:11.886][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.887][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2025-02-22 16:06:11.889][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:11.903][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2025-02-22 16:06:11.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-22 16:06:11.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2025-02-22 16:06:11.928][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:11.945][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2025-02-22 16:06:11.976][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-22 16:06:11.980][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:11.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2025-02-22 16:06:11.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:12.002][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2025-02-22 16:06:12.031][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-22 16:06:12.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:12.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2025-02-22 16:06:12.038][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:12.051][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2025-02-22 16:06:12.074][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:12.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:12.089][biodb::testThat]
biodb.INFO [2025-02-22 16:06:12.090][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-02-22 16:06:12.091][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:12.092][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:12.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:12.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.101][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:12.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:12.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:12.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:12.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:12.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:12.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:12.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:12.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:12.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:12.167][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:12.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:12.171][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-22 16:06:12.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:12.175][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-22 16:06:12.177][private$loadEntries] Creating entries from ids [3]: "172649379, 172631573, 172608227".
biodb.DEBUG[2025-02-22 16:06:12.178][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-22 16:06:12.180][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172649379, 172631573, 172608227".
biodb.TRACE[2025-02-22 16:06:12.182][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-22 16:06:12.232][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172649379.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172631573.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172608227.xml".
biodb.DEBUG[2025-02-22 16:06:12.234][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:12.235][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-22 16:06:12.237][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:12.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:12.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:12.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:12.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:12.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:12.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:12.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:12.255][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.257][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.266][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.267][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.277][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.279][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.288][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.289][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.298][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.299][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.301][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.308][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.309][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.318][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:12.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:12.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.328][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:12.329][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:12.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:12.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:12.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:12.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:12.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:12.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:12.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.349][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.350][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.361][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:12.362][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:12.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.366][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:12.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:12.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.372][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:12.373][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:12.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.383][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.385][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.387][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.393][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.394][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.403][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.418][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:12.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.432][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:12.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.447][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:12.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:12.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:12.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:12.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:12.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:12.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:12.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:12.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:12.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:12.536][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.546][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.548][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.550][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.556][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.558][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.566][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.567][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.576][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.577][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.586][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.587][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.596][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:12.597][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:12.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.600][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.601][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:12.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:12.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.606][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:12.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:12.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.611][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.616][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:12.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:12.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.636][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:12.638][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:12.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:12.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:12.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.646][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:12.647][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:12.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.656][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.657][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.666][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.667][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:12.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.719][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:12.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.733][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:12.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:12.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:12.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:12.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:12.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:12.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:12.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:12.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:12.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:12.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:12.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:12.801][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:12.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:12.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.812][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.813][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.815][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.822][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.823][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.826][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.832][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.834][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.843][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.844][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.853][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.854][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.857][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.863][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:12.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:12.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.868][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:12.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:12.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.873][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:12.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:12.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:12.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:12.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:12.885][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:12.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.896][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:12.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:12.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:12.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.910][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:12.912][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:12.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.914][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:12.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.920][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:12.922][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.924][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.930][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.932][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.940][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.941][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:12.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:12.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.965][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:12.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:12.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.979][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:12.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.993][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:12.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:12.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:12.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.008][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:13.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.022][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:13.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:13.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:13.104][self$createEntryFromContent] Accession numbers: 172649379, 172631573, 172608227.
biodb.DEBUG[2025-02-22 16:06:13.105][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:13.107][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:13.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:13.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:13.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:13.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:13.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:13.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:13.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.130][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.131][private$selectFields]
biodb.TRACE[2025-02-22 16:06:13.133][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:13.134][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:13.135][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.136][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.137][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.140][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.141][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.142][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.145][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.147][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.151][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.153][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:13.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.176][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172649379].
biodb.DEBUG[2025-02-22 16:06:13.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:13.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:13.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:13.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:13.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:13.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:13.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:13.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.201][private$selectFields]
biodb.TRACE[2025-02-22 16:06:13.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:13.204][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:13.205][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.214][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.217][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.223][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:13.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-22 16:06:13.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:13.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:13.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:13.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:13.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:13.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:13.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:13.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.264][private$selectFields]
biodb.TRACE[2025-02-22 16:06:13.266][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:13.267][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:13.268][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.280][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:13.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.286][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:13.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-22 16:06:13.310][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:13.311][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:13.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:13.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:13.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:13.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:13.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:13.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:13.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:13.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:13.337][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:13.338][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:13.340][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:13.426][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:13.427][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:13.429][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:13.430][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:13.484][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:13.487][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2025-02-22 16:06:13.492][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2025-02-22 16:06:13.495][private$loadEntries] Creating entries from ids [3]: "172642450, 172529292, 172529260".
biodb.DEBUG[2025-02-22 16:06:13.496][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-22 16:06:13.498][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172642450, 172529292, 172529260".
biodb.TRACE[2025-02-22 16:06:13.500][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:13.502][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:13.503][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:13.505][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:13.506][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:13.507][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:13.508][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-22 16:06:13.510][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML".
biodb.DEBUG[2025-02-22 16:06:13.513][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:13.514][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:13.515][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML".
biodb.TRACE[2025-02-22 16:06:13.599][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML).
biodb.TRACE[2025-02-22 16:06:13.702][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172642450.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529292.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529260.xml"
biodb.DEBUG[2025-02-22 16:06:13.707][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:13.708][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-22 16:06:13.710][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:13.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:13.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:13.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:13.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:13.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:13.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:13.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:13.727][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.737][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.739][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.748][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.749][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.758][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.759][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.768][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.769][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.778][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.779][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.788][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:13.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:13.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.793][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:13.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:13.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.798][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:13.799][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:13.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:13.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:13.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:13.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:13.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:13.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:13.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:13.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:13.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.821][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:13.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:13.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.828][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:13.829][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:13.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.833][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:13.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:13.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.838][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:13.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:13.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:13.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:13.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.848][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:13.849][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:13.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:13.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:13.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.857][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:13.859][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:13.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:13.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:13.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.868][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:13.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:13.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.882][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:13.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:13.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.896][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:13.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.911][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:13.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.925][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:13.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:13.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:13.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:13.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:13.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:13.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:13.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:13.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:13.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:13.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:13.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:13.994][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:13.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:13.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:13.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:13.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.004][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.005][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.014][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.015][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.018][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.031][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.036][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.039][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.046][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.047][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.050][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.056][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.058][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.066][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:14.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.070][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.072][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.077][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:14.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:14.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.080][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.082][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:14.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:14.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:14.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:14.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:14.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:14.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.102][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:14.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:14.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.109][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:14.110][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:14.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:14.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.119][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:14.121][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:14.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:14.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:14.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.130][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:14.131][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:14.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:14.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:14.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.140][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:14.141][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:14.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:14.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:14.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.151][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:14.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.166][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.181][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.196][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:14.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.230][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:14.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:14.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:14.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:14.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:14.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:14.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:14.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:14.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:14.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:14.285][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.296][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.297][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.306][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.307][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.310][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.316][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.318][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.327][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.328][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.337][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.338][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.347][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:14.349][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.353][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:14.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.358][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:14.359][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:14.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.363][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:14.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:14.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.368][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:14.369][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:14.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:14.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:14.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:14.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:14.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.382][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:14.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:14.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.388][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:14.390][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:14.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.394][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:14.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:14.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.398][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:14.400][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:14.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:14.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:14.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.409][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:14.410][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:14.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.412][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:14.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:14.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.419][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:14.420][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:14.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:14.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.429][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:14.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:14.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:14.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.481][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:14.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:14.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:14.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:14.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:14.593][self$createEntryFromContent] Accession numbers: 172642450, 172529292, 172529260.
biodb.DEBUG[2025-02-22 16:06:14.614][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:14.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:14.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:14.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:14.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:14.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:14.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:14.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.659][private$selectFields]
biodb.TRACE[2025-02-22 16:06:14.660][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:14.661][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:14.662][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.670][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.673][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.674][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.679][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.680][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:14.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:14.697][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:14.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:14.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:14.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:14.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:14.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:14.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.721][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.722][private$selectFields]
biodb.TRACE[2025-02-22 16:06:14.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:14.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:14.725][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.731][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.732][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.735][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.736][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.737][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.739][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.742][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.743][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:14.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-22 16:06:14.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:14.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:14.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:14.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:14.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:14.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:14.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:14.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.784][private$selectFields]
biodb.TRACE[2025-02-22 16:06:14.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:14.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:14.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.799][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.800][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:14.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.806][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:14.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:14.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-22 16:06:14.823][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:14.824][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:14.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:14.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:14.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:14.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:14.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:14.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:14.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:14.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:14.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:14.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:14.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:14.950][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:14.951][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-22 16:06:14.953][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:14.967][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-22 16:06:14.970][private$loadEntries] Creating entries from ids [3]: "172647079, 172647078, 172623142".
biodb.DEBUG[2025-02-22 16:06:14.971][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-22 16:06:14.973][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172647079, 172647078, 172623142".
biodb.TRACE[2025-02-22 16:06:14.974][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-22 16:06:15.015][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172647079.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172647078.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172623142.xml".
biodb.DEBUG[2025-02-22 16:06:15.017][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:15.019][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-22 16:06:15.020][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:15.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:15.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:15.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:15.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:15.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:15.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:15.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:15.038][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.039][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.048][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.049][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.058][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.068][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.069][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.078][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.079][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.088][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.089][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.092][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.098][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:15.099][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:15.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.102][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.103][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:15.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:15.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.108][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:15.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:15.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:15.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:15.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:15.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.122][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:15.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:15.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.138][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:15.139][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:15.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.148][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:15.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:15.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.151][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:15.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.158][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.159][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.168][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.169][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.178][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:15.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.192][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:15.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.208][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:15.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.223][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:15.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.238][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:15.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:15.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:15.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:15.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:15.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:15.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:15.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:15.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:15.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:15.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:15.315][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.316][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.325][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.326][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.328][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.335][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.336][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.345][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.346][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.349][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.355][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.356][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.365][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.366][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.375][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:15.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:15.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:15.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:15.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.385][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:15.387][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:15.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.390][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:15.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:15.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:15.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:15.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:15.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:15.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.406][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.407][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.409][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.416][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:15.417][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:15.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.421][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:15.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:15.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.426][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:15.427][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:15.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:15.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:15.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.436][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.437][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.439][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.446][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.447][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.456][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.471][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:15.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.500][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:15.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.514][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:15.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:15.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:15.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:15.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:15.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:15.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:15.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:15.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:15.584][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.594][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.595][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.604][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.605][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.614][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.616][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.625][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.626][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.635][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.636][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.645][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:15.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:15.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.650][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:15.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:15.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:15.657][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:15.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:15.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:15.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:15.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:15.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:15.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:15.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:15.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.694][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:15.695][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:15.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.699][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:15.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.704][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:15.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:15.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:15.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.714][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.715][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.718][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:15.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.724][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.725][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:15.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.734][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:15.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:15.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.749][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:15.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:15.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.764][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:15.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:15.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.778][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:15.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.793][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:15.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:15.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:15.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:15.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:15.890][self$createEntryFromContent] Accession numbers: 172647079, 172647078, 172623142.
biodb.DEBUG[2025-02-22 16:06:15.891][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:15.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:15.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:15.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:15.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:15.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:15.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:15.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:15.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.916][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:15.917][private$selectFields]
biodb.TRACE[2025-02-22 16:06:15.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:15.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:15.921][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:15.922][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.923][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.931][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:15.933][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:15.934][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.938][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:15.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.954][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647079].
biodb.DEBUG[2025-02-22 16:06:15.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:15.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:15.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:15.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:15.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:15.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:15.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.979][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:15.980][private$selectFields]
biodb.TRACE[2025-02-22 16:06:15.981][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:15.982][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:15.983][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:15.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.988][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.989][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.990][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:15.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:15.994][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:15.995][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:15.996][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:15.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.001][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:16.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.017][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647078].
biodb.DEBUG[2025-02-22 16:06:16.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:16.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:16.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:16.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:16.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:16.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:16.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:16.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.041][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:16.042][private$selectFields]
biodb.TRACE[2025-02-22 16:06:16.044][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:16.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:16.046][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:16.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.048][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:16.058][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:16.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.064][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:16.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-22 16:06:16.081][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:16.082][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:16.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:16.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:16.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:16.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:16.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:16.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:16.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:16.110][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:16.114][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:16.115][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:16.117][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:16.188][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:16.190][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:16.191][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:16.193][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:16.245][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:16.248][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2025-02-22 16:06:16.252][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2025-02-22 16:06:16.255][private$loadEntries] Creating entries from ids [2]: "172641880, 172634706".
biodb.DEBUG[2025-02-22 16:06:16.257][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-22 16:06:16.258][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172641880, 172634706".
biodb.TRACE[2025-02-22 16:06:16.260][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:16.261][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:16.263][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:16.264][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:16.265][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:16.266][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:16.282][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-22 16:06:16.284][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML".
biodb.DEBUG[2025-02-22 16:06:16.287][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:16.288][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:16.289][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML".
biodb.TRACE[2025-02-22 16:06:16.373][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML).
biodb.TRACE[2025-02-22 16:06:16.463][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172641880.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172634706.xml"
biodb.DEBUG[2025-02-22 16:06:16.467][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:16.468][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-22 16:06:16.470][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:16.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:16.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:16.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:16.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:16.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:16.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:16.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:16.487][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.497][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.498][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.507][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.508][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.517][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.518][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.527][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.528][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.537][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.538][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.547][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:16.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:16.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.550][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.552][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:16.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.557][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:16.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:16.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:16.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:16.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.567][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:16.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:16.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:16.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:16.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:16.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:16.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:16.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.587][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:16.588][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:16.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:16.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:16.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.597][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:16.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:16.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.600][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:16.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:16.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.606][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:16.608][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:16.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.616][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:16.618][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:16.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:16.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:16.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.626][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.641][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:16.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:16.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:16.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:16.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:16.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:16.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:16.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:16.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:16.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:16.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:16.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:16.752][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.762][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.764][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.773][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.784][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.787][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.793][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.795][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.804][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.805][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.807][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.814][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.815][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.817][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.824][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:16.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:16.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.827][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:16.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:16.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.834][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:16.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:16.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.839][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:16.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:16.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:16.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:16.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:16.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:16.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.854][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:16.855][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:16.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:16.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:16.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.864][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:16.865][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:16.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.869][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:16.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:16.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.874][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:16.875][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:16.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:16.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:16.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.884][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:16.885][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:16.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:16.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.894][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:16.896][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:16.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:16.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:16.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.904][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:16.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:16.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.919][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:16.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:16.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.934][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:16.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.948][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:16.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:16.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.963][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:16.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:16.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:16.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:16.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:16.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:16.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:16.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:16.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:17.045][self$createEntryFromContent] Accession numbers: 172641880, 172634706.
biodb.DEBUG[2025-02-22 16:06:17.046][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:17.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:17.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.100][private$selectFields]
biodb.TRACE[2025-02-22 16:06:17.101][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:17.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:17.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.109][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.124][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.125][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.126][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.128][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.130][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:17.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:17.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:17.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.178][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.179][private$selectFields]
biodb.TRACE[2025-02-22 16:06:17.180][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:17.181][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:17.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.183][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.184][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.187][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.188][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.192][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.194][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.200][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:17.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-22 16:06:17.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:17.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.244][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.245][private$selectFields]
biodb.TRACE[2025-02-22 16:06:17.246][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:17.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:17.249][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.250][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.259][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.261][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.266][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.267][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:17.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.283][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-22 16:06:17.284][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:17.285][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:17.296][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:17.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:17.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:17.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:17.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:17.311][biodb::testThat]
biodb.INFO [2025-02-22 16:06:17.312][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-02-22 16:06:17.313][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:17.315][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:17.318][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:17.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:17.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.323][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:17.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:17.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:17.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:17.394][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2025-02-22 16:06:17.396][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:17.410][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2025-02-22 16:06:17.413][private$loadEntries] Creating entries from ids [1]: "172574413".
biodb.DEBUG[2025-02-22 16:06:17.414][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:06:17.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172574413".
biodb.TRACE[2025-02-22 16:06:17.418][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:17.433][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172574413.xml".
biodb.DEBUG[2025-02-22 16:06:17.435][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:17.436][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:06:17.438][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:17.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:17.455][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.465][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.466][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.475][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.476][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.485][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.486][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.488][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.495][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.496][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.498][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.505][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.506][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.515][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:17.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:17.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:17.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.525][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:17.526][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:17.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.530][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:17.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:17.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.535][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:17.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:17.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:17.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.545][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:17.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:17.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.555][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:17.556][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:17.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.559][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.560][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:17.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.565][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:17.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.569][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:17.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:17.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.575][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:17.576][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:17.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.585][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:17.587][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:17.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.595][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:17.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:17.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.643][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:17.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.658][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:17.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:17.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.673][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:17.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:17.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.688][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:17.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:17.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:17.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:17.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:17.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:17.756][self$createEntryFromContent] Accession numbers: 172574413.
biodb.DEBUG[2025-02-22 16:06:17.758][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:17.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:17.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.784][private$selectFields]
biodb.TRACE[2025-02-22 16:06:17.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:17.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:17.788][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.805][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-22 16:06:17.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.846][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.847][private$selectFields]
biodb.TRACE[2025-02-22 16:06:17.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:17.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:17.851][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.856][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.862][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.868][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:17.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-22 16:06:17.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:17.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.909][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.910][private$selectFields]
biodb.TRACE[2025-02-22 16:06:17.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:17.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:17.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.924][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.925][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:17.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.931][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:17.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172574413].
biodb.DEBUG[2025-02-22 16:06:17.949][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:17.950][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:17.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:17.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:17.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:17.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:17.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:17.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:17.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:17.971][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:17.975][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:17.976][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:17.978][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:18.048][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:18.049][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:18.051][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:18.053][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:18.100][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:18.102][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2025-02-22 16:06:18.107][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2025-02-22 16:06:18.110][private$loadEntries] Creating entries from ids [2]: "172524779, 172415476".
biodb.DEBUG[2025-02-22 16:06:18.111][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-22 16:06:18.113][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172524779, 172415476".
biodb.TRACE[2025-02-22 16:06:18.115][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:18.116][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:18.118][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:18.119][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:18.120][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:18.122][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:18.123][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-22 16:06:18.125][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML".
biodb.DEBUG[2025-02-22 16:06:18.128][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:18.129][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:18.130][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML".
biodb.TRACE[2025-02-22 16:06:18.203][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML).
biodb.TRACE[2025-02-22 16:06:18.368][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172524779.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172415476.xml"
biodb.DEBUG[2025-02-22 16:06:18.372][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:18.373][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-22 16:06:18.375][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:18.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:18.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:18.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:18.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:18.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:18.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:18.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:18.393][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.406][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.413][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.414][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.423][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.424][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.434][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.435][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.444][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.445][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.455][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.456][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.465][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:18.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:18.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:18.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:18.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.475][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:18.476][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:18.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.485][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:18.486][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:18.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.488][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:18.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:18.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:18.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:18.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.498][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:18.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:18.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.505][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:18.506][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:18.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.510][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:18.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:18.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.515][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:18.516][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:18.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:18.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:18.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.525][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:18.527][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:18.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:18.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:18.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.535][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:18.537][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:18.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.546][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:18.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.560][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.575][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:18.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.589][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:18.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.604][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:18.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:18.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:18.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:18.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:18.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:18.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:18.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:18.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:18.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:18.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:18.672][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.676][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.682][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.684][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.692][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.694][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.702][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.704][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.713][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.714][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.723][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.724][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.733][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:18.734][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:18.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.736][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.738][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:18.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:18.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.743][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:18.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:18.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.746][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:18.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:18.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.753][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:18.754][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:18.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:18.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:18.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.763][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:18.764][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:18.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:18.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:18.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.773][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:18.774][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:18.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.783][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:18.784][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:18.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:18.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.793][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:18.794][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:18.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:18.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:18.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.803][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:18.804][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:18.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.807][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:18.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:18.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.813][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:18.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:18.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:18.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.850][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:18.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:18.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.865][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:18.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:18.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.879][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:18.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:18.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:18.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:18.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:18.962][self$createEntryFromContent] Accession numbers: 172524779, 172415476.
biodb.DEBUG[2025-02-22 16:06:18.964][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:18.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:18.967][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:18.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:18.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:18.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:18.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:18.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:18.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:18.989][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:18.991][private$selectFields]
biodb.TRACE[2025-02-22 16:06:18.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:18.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:18.994][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:18.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.997][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:18.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:18.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.006][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.007][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.012][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:19.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:19.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:19.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:19.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:19.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:19.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:19.041][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:19.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:19.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.054][private$selectFields]
biodb.TRACE[2025-02-22 16:06:19.056][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:19.057][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:19.058][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.063][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.069][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.070][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.076][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:19.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.092][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-02-22 16:06:19.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:19.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:19.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:19.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:19.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:19.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:19.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:19.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.116][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.118][private$selectFields]
biodb.TRACE[2025-02-22 16:06:19.119][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:19.120][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:19.121][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.131][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.133][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.139][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:19.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.155][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172415476].
biodb.DEBUG[2025-02-22 16:06:19.156][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:19.157][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:19.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:19.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:19.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:19.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:19.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:19.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:19.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:19.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:19.234][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:19.238][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:19.239][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2025-02-22 16:06:19.241][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:19.262][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2025-02-22 16:06:19.265][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:19.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:19.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:19.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:19.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:19.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:19.278][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:19.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:19.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.292][private$selectFields]
biodb.TRACE[2025-02-22 16:06:19.293][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:19.295][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:19.296][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.301][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.302][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.308][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.310][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.314][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:19.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647079].
biodb.DEBUG[2025-02-22 16:06:19.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:19.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:19.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:19.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:19.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:19.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:19.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.357][private$selectFields]
biodb.TRACE[2025-02-22 16:06:19.358][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:19.359][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:19.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.363][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.371][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.372][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.377][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.378][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:19.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.395][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647078].
biodb.DEBUG[2025-02-22 16:06:19.396][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:19.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:19.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:19.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:19.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:19.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:19.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:19.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.419][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.421][private$selectFields]
biodb.TRACE[2025-02-22 16:06:19.422][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:19.423][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:19.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.436][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:19.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.442][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:19.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:19.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-22 16:06:19.459][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:19.461][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:19.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:19.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:19.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:19.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:19.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:19.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:19.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:19.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:19.485][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:19.487][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:19.488][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:19.561][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:19.563][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:19.564][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:19.566][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:19.626][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:19.629][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2025-02-22 16:06:19.634][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2025-02-22 16:06:19.637][private$loadEntries] Creating entries from ids [2]: "172583683, 172561660".
biodb.DEBUG[2025-02-22 16:06:19.639][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-22 16:06:19.640][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172583683, 172561660".
biodb.TRACE[2025-02-22 16:06:19.642][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:19.644][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:19.645][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:19.646][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:19.647][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:19.648][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:19.650][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-22 16:06:19.652][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.DEBUG[2025-02-22 16:06:19.654][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:19.655][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:19.657][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.TRACE[2025-02-22 16:06:19.729][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML).
biodb.TRACE[2025-02-22 16:06:19.820][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172583683.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172561660.xml"
biodb.DEBUG[2025-02-22 16:06:19.823][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:19.825][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-22 16:06:19.827][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:19.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:19.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:19.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:19.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:19.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:19.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:19.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:19.844][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:19.846][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:19.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:19.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.854][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:19.856][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:19.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:19.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:19.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.865][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:19.866][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:19.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:19.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:19.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.875][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:19.876][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:19.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:19.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:19.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.885][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:19.886][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:19.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:19.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:19.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.895][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:19.896][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:19.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.905][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:19.907][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.910][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:19.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:19.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.916][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:19.917][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:19.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.919][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:19.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:19.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:19.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:19.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:19.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:19.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.936][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:19.937][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:19.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:19.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:19.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.946][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:19.947][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:19.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.951][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:19.952][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:19.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:19.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:19.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.961][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:19.962][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:19.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:19.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:19.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.981][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:19.982][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:19.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:19.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:19.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.991][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:19.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:19.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:19.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:19.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:19.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:19.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:20.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.022][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:20.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.036][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:20.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.051][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:20.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:20.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:20.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:20.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:20.120][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.131][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.132][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.134][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.141][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.142][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.151][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.152][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.161][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.162][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.171][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.173][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.182][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:20.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:20.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.187][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:20.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:20.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.192][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:20.193][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:20.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:20.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:20.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:20.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:20.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:20.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:20.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:20.214][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:20.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:20.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:20.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.223][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:20.224][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:20.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.228][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:20.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:20.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.233][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:20.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:20.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.243][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:20.244][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:20.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.248][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:20.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:20.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.253][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:20.255][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:20.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.258][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:20.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:20.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.263][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:20.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:20.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.293][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:20.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:20.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.307][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:20.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.322][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:20.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:20.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.336][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:20.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:20.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:20.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:20.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:20.411][self$createEntryFromContent] Accession numbers: 172583683, 172561660.
biodb.DEBUG[2025-02-22 16:06:20.413][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:20.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:20.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.439][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.440][private$selectFields]
biodb.TRACE[2025-02-22 16:06:20.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:20.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:20.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.454][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.456][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.462][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:20.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:20.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.502][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.504][private$selectFields]
biodb.TRACE[2025-02-22 16:06:20.505][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:20.506][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:20.507][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.508][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.510][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.512][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.518][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.519][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.524][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.525][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:20.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.541][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172583683].
biodb.DEBUG[2025-02-22 16:06:20.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:20.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.568][private$selectFields]
biodb.TRACE[2025-02-22 16:06:20.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:20.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:20.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.584][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.585][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.586][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.590][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:20.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172561660].
biodb.DEBUG[2025-02-22 16:06:20.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:20.609][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:20.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.624][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:20.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:20.635][biodb::testThat]
biodb.INFO [2025-02-22 16:06:20.636][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-02-22 16:06:20.637][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:20.638][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:20.642][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:20.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:20.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.647][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:20.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:20.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:20.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:20.715][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:20.718][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:20.720][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-22 16:06:20.722][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:20.724][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-22 16:06:20.726][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:20.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:20.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.751][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.752][private$selectFields]
biodb.TRACE[2025-02-22 16:06:20.753][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:20.754][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:20.755][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.758][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.768][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.769][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.770][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.773][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:20.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.790][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172649379].
biodb.DEBUG[2025-02-22 16:06:20.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:20.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.815][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.816][private$selectFields]
biodb.TRACE[2025-02-22 16:06:20.817][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:20.818][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:20.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.828][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.829][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.838][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.839][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.845][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:20.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-22 16:06:20.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:20.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.887][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.888][private$selectFields]
biodb.TRACE[2025-02-22 16:06:20.889][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:20.890][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:20.891][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.897][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.898][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.901][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.902][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.903][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.909][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-22 16:06:20.926][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:20.928][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:20.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:20.949][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:20.953][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:20.955][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-22 16:06:20.956][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:20.959][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-22 16:06:20.961][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:20.962][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:20.964][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:20.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:20.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:20.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:20.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:20.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.987][private$selectFields]
biodb.TRACE[2025-02-22 16:06:20.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:20.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:20.991][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:20.992][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.993][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:20.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:20.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:20.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.001][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.003][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.008][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:21.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.028][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:21.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.050][private$selectFields]
biodb.TRACE[2025-02-22 16:06:21.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:21.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:21.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.061][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.063][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.064][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.065][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.066][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.070][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.071][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.087][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-22 16:06:21.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:21.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.111][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.113][private$selectFields]
biodb.TRACE[2025-02-22 16:06:21.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:21.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:21.116][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.127][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.128][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.134][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.150][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-22 16:06:21.151][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:21.152][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.207][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:21.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:21.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.223][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:21.240][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:21.251][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:21.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-22 16:06:21.254][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:21.256][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-22 16:06:21.258][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:21.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:21.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.284][private$selectFields]
biodb.TRACE[2025-02-22 16:06:21.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:21.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:21.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.289][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.300][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.301][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.306][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.322][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647079].
biodb.DEBUG[2025-02-22 16:06:21.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:21.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.348][private$selectFields]
biodb.TRACE[2025-02-22 16:06:21.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:21.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:21.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.352][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.362][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.363][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.366][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.368][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.369][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.385][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647078].
biodb.DEBUG[2025-02-22 16:06:21.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:21.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.410][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.411][private$selectFields]
biodb.TRACE[2025-02-22 16:06:21.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:21.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:21.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.420][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.426][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.428][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.432][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-22 16:06:21.449][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:21.451][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:21.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:21.472][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:21.476][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:21.477][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-22 16:06:21.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:21.481][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-22 16:06:21.484][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:21.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:21.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.509][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.510][private$selectFields]
biodb.TRACE[2025-02-22 16:06:21.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:21.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:21.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.524][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.525][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.531][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:21.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:21.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.572][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.573][private$selectFields]
biodb.TRACE[2025-02-22 16:06:21.574][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:21.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:21.577][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.582][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.584][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.586][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.588][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.593][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.594][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.610][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-22 16:06:21.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.623][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:21.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.636][private$selectFields]
biodb.TRACE[2025-02-22 16:06:21.637][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:21.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:21.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.650][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.651][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:21.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.657][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:21.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:21.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-22 16:06:21.682][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:21.683][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:21.709][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:21.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:21.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.714][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:21.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:21.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:21.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:21.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.730][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.732][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.735][ef$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:21.739][biodb::testThat]
biodb.INFO [2025-02-22 16:06:21.741][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-02-22 16:06:21.743][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:21.745][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:21.751][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:21.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:21.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:21.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.791][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:21.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:21.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:21.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:21.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:21.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:21.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:21.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:21.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:21.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:21.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:21.822][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:21.826][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:21.827][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:21.829][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:21.901][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:21.902][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:21.904][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:21.905][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:21.958][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:21.962][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2025-02-22 16:06:21.967][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2025-02-22 16:06:21.970][private$loadEntries] Creating entries from ids [2]: "172653378, 172651172".
biodb.DEBUG[2025-02-22 16:06:21.972][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-22 16:06:21.974][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172653378, 172651172".
biodb.TRACE[2025-02-22 16:06:21.975][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:21.977][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:21.978][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:21.979][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:21.980][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:21.982][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:21.983][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-22 16:06:21.985][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172653378,172651172/XML".
biodb.DEBUG[2025-02-22 16:06:21.987][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:21.989][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:21.990][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172653378,172651172/XML".
biodb.TRACE[2025-02-22 16:06:22.113][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172653378,172651172/XML).
biodb.TRACE[2025-02-22 16:06:22.221][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172653378.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172651172.xml"
biodb.DEBUG[2025-02-22 16:06:22.225][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:22.226][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-22 16:06:22.228][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:22.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:22.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:22.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:22.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:22.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:22.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:22.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:22.245][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.255][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.256][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.265][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.266][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.275][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.276][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.285][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.286][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.295][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.296][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.305][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:22.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:22.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.310][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:22.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:22.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.315][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:22.316][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:22.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:22.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:22.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:22.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:22.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.328][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.330][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:22.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:22.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:22.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:22.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:22.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:22.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.345][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:22.346][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:22.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.350][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:22.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:22.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.355][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:22.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:22.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:22.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:22.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.365][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:22.366][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:22.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.368][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:22.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:22.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.375][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:22.376][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:22.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.380][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:22.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.385][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:22.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.399][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:22.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.428][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:22.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:22.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:22.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:22.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:22.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:22.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:22.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:22.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:22.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:22.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:22.524][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.534][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.535][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.544][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.545][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.547][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.554][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.555][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.564][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.565][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.574][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.576][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.584][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:22.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:22.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.589][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.594][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:22.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:22.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.599][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:22.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.604][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:22.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:22.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:22.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:22.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:22.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:22.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:22.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.624][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:22.625][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:22.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:22.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.634][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:22.635][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:22.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:22.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:22.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.644][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:22.645][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:22.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:22.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:22.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.654][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:22.655][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:22.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:22.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:22.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:22.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.707][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:22.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:22.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.721][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:22.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:22.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:22.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.755][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:22.803][self$createEntryFromContent] Accession numbers: 172653378, 172651172.
biodb.DEBUG[2025-02-22 16:06:22.804][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:22.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:22.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:22.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:22.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:22.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:22.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:22.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.829][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.830][private$selectFields]
biodb.TRACE[2025-02-22 16:06:22.832][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:22.833][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:22.834][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.841][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.843][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.846][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.851][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:22.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172653378].
biodb.DEBUG[2025-02-22 16:06:22.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:22.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:22.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:22.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:22.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:22.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:22.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:22.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.901][private$selectFields]
biodb.TRACE[2025-02-22 16:06:22.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:22.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:22.904][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.906][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.907][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.914][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.915][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.916][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.922][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:22.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172651172].
biodb.DEBUG[2025-02-22 16:06:22.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:22.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:22.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:22.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:22.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:22.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:22.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:22.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.963][private$selectFields]
biodb.TRACE[2025-02-22 16:06:22.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:22.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:22.967][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.972][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.973][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.974][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.977][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.978][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.979][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:22.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.985][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:22.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:22.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:22.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:22.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.001][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172649379].
biodb.DEBUG[2025-02-22 16:06:23.002][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:23.003][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:23.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:23.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:23.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:23.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:23.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:23.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:23.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:23.025][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:23.028][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:23.030][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:23.032][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:23.106][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:23.107][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:23.109][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:23.111][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:23.161][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:23.164][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2025-02-22 16:06:23.169][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2025-02-22 16:06:23.173][private$loadEntries] Creating entries from ids [3]: "172645198, 172645159, 172645048".
biodb.DEBUG[2025-02-22 16:06:23.174][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-22 16:06:23.176][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172645198, 172645159, 172645048".
biodb.TRACE[2025-02-22 16:06:23.178][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:23.180][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:23.181][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:23.182][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:23.184][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:23.185][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:23.186][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-22 16:06:23.188][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML".
biodb.DEBUG[2025-02-22 16:06:23.191][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:23.192][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:23.194][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML".
biodb.TRACE[2025-02-22 16:06:23.269][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML).
biodb.TRACE[2025-02-22 16:06:23.372][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645198.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645159.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645048.xml"
biodb.DEBUG[2025-02-22 16:06:23.377][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:23.378][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-22 16:06:23.380][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:23.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:23.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:23.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:23.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:23.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:23.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:23.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:23.397][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.401][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.408][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.409][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.418][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.419][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.428][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.430][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.439][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.440][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.449][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.450][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.459][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:23.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:23.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.464][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:23.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:23.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.469][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:23.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:23.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:23.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:23.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.479][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:23.481][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:23.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:23.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:23.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.490][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:23.491][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:23.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.493][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:23.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.500][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:23.501][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:23.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.505][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:23.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:23.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:23.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.515][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:23.516][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:23.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:23.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.525][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:23.526][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:23.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:23.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:23.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.535][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:23.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.550][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:23.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.564][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:23.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.590][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:23.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.605][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:23.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:23.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:23.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:23.660][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:23.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:23.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:23.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:23.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:23.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:23.674][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.684][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.685][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.694][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.695][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.704][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.705][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.714][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.715][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.717][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.724][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.725][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.734][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:23.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:23.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.739][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:23.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:23.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:23.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.754][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:23.755][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:23.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:23.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:23.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.764][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:23.765][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:23.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:23.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.774][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:23.775][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:23.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.779][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:23.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:23.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:23.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:23.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.789][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:23.790][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:23.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:23.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:23.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.799][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:23.800][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:23.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.804][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:23.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:23.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:23.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.823][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:23.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.837][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:23.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.852][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:23.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.866][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:23.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:23.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:23.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:23.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:23.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:23.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:23.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:23.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:23.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:23.934][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.935][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:23.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:23.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.943][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.945][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:23.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.953][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.955][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.957][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:23.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.963][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.965][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:23.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.973][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.975][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.977][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:23.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.983][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.984][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:23.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:23.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:23.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.001][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:24.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:24.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.006][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:24.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:24.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.011][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:24.012][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:24.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:24.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:24.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.021][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:24.022][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:24.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.025][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:24.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:24.032][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:24.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.041][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:24.043][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:24.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.045][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.046][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:24.048][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:24.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.050][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:24.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:24.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.056][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:24.057][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:24.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:24.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:24.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.066][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:24.067][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:24.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:24.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:24.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.076][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:24.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:24.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:24.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:24.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:24.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:24.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.090][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:24.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:24.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:24.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:24.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:24.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:24.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:24.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:24.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:24.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:24.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:24.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:24.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.119][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:24.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:24.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:24.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:24.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:24.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:24.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.133][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:24.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:24.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:24.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:24.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:24.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:24.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:24.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:24.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:24.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:24.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:24.230][self$createEntryFromContent] Accession numbers: 172645198, 172645159, 172645048.
biodb.DEBUG[2025-02-22 16:06:24.231][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:24.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.257][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.262][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.272][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.273][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.274][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.276][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.277][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-22 16:06:24.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.317][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.318][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.321][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.333][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.339][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.355][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-22 16:06:24.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.381][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.383][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.385][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.387][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.403][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.409][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-22 16:06:24.426][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:24.427][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:24.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.457][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:24.473][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:24.476][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:24.478][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-22 16:06:24.479][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:24.481][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-22 16:06:24.484][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:24.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.508][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.509][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.513][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.515][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.519][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.520][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.524][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.525][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.531][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.547][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172649379].
biodb.DEBUG[2025-02-22 16:06:24.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.572][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.573][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.574][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.576][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.583][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.587][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.593][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.609][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-22 16:06:24.610][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.633][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.634][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.638][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.642][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.645][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.647][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.648][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.649][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.655][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.671][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-22 16:06:24.672][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:24.673][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:24.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:24.694][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:24.697][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:24.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-22 16:06:24.701][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:24.703][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-22 16:06:24.705][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:24.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.730][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.733][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.734][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.740][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.741][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.744][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.745][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.751][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:24.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.793][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.794][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.796][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.807][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.808][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.817][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.821][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.837][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-22 16:06:24.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:24.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.863][private$selectFields]
biodb.TRACE[2025-02-22 16:06:24.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:24.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:24.867][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.878][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:24.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.883][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.884][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:24.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:24.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:24.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:24.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-22 16:06:24.901][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:24.902][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:24.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:24.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:24.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:24.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:24.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:24.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:24.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:24.947][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:24.951][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:24.952][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:24.954][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:25.031][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:25.032][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:25.034][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:25.036][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:25.094][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:25.097][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2025-02-22 16:06:25.102][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2025-02-22 16:06:25.105][private$loadEntries] Creating entries from ids [3]: "172650485, 172650464, 172650448".
biodb.DEBUG[2025-02-22 16:06:25.106][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-22 16:06:25.108][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172650485, 172650464, 172650448".
biodb.TRACE[2025-02-22 16:06:25.110][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:25.111][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:25.113][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:25.114][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:25.115][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:25.116][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:25.118][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-22 16:06:25.120][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172650485,172650464,172650448/XML".
biodb.DEBUG[2025-02-22 16:06:25.122][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:25.124][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:25.125][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172650485,172650464,172650448/XML".
biodb.TRACE[2025-02-22 16:06:25.198][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172650485,172650464,172650448/XML).
biodb.TRACE[2025-02-22 16:06:25.300][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172650485.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172650464.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172650448.xml"
biodb.DEBUG[2025-02-22 16:06:25.304][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:25.306][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-22 16:06:25.308][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:25.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:25.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:25.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:25.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:25.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:25.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:25.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:25.324][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.326][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.328][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.334][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.336][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.344][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.346][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.354][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.356][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.364][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.366][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.368][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.374][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.375][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.384][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:25.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:25.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.389][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:25.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.394][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:25.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:25.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:25.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:25.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:25.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:25.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:25.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:25.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.414][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.415][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.423][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:25.425][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:25.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.428][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:25.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:25.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.433][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:25.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:25.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:25.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.443][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.444][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.453][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:25.454][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:25.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:25.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.463][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:25.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.491][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:25.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.506][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:25.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:25.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.545][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:25.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:25.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:25.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:25.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:25.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:25.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:25.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:25.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:25.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.610][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.612][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.620][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.622][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.630][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.632][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.640][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.642][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.650][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.652][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.660][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:25.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:25.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.665][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:25.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:25.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:25.671][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:25.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:25.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:25.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:25.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:25.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:25.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:25.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.693][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.700][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:25.701][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:25.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.703][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.704][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:25.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:25.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.709][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:25.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:25.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:25.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:25.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.719][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.720][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.723][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.729][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:25.730][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:25.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.732][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:25.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:25.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.739][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:25.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.753][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:25.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.767][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:25.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:25.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.796][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:25.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.810][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:25.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:25.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:25.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:25.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:25.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:25.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:25.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:25.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:25.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:25.863][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.864][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.873][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.874][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:25.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.883][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.884][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.886][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.893][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.894][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:25.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.903][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.904][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:25.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.913][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.914][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:25.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.923][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:25.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:25.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.928][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:25.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:25.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.933][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:25.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:25.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.936][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.944][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.949][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:25.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:25.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:25.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:25.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.970][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:25.971][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:25.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.980][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:25.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:25.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:25.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:25.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.990][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.992][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:25.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:25.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:25.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.000][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:26.001][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:26.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:26.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.025][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:26.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.039][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:26.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.054][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:26.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.068][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:26.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:26.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:26.164][self$createEntryFromContent] Accession numbers: 172650485, 172650464, 172650448.
biodb.DEBUG[2025-02-22 16:06:26.165][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:26.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:26.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:26.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:26.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:26.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:26.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:26.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.189][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.190][private$selectFields]
biodb.TRACE[2025-02-22 16:06:26.192][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:26.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:26.194][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.206][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.210][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.212][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:26.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172650485].
biodb.DEBUG[2025-02-22 16:06:26.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:26.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:26.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:26.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:26.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:26.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:26.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:26.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.254][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.255][private$selectFields]
biodb.TRACE[2025-02-22 16:06:26.256][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:26.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:26.258][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.269][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.270][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.276][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:26.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.292][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172650464].
biodb.DEBUG[2025-02-22 16:06:26.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:26.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:26.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:26.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:26.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:26.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:26.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:26.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.317][private$selectFields]
biodb.TRACE[2025-02-22 16:06:26.318][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:26.319][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:26.320][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.325][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.331][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.332][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:26.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.336][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.337][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:26.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172650448].
biodb.DEBUG[2025-02-22 16:06:26.362][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:26.363][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:26.365][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:26.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:26.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:26.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:26.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:26.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:26.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:26.384][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:26.388][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:26.389][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:26.391][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:26.474][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:26.475][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:26.477][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:26.479][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:26.530][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:26.533][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2025-02-22 16:06:26.539][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2025-02-22 16:06:26.542][private$loadEntries] Creating entries from ids [3]: "172652714, 150123692, 172649157".
biodb.DEBUG[2025-02-22 16:06:26.543][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-22 16:06:26.545][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172652714, 150123692, 172649157".
biodb.TRACE[2025-02-22 16:06:26.547][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:26.548][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:26.550][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:26.551][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:26.552][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:26.553][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:26.555][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-22 16:06:26.557][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172652714,150123692,172649157/XML".
biodb.DEBUG[2025-02-22 16:06:26.559][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:26.560][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:26.562][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172652714,150123692,172649157/XML".
biodb.TRACE[2025-02-22 16:06:26.634][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172652714,150123692,172649157/XML).
biodb.TRACE[2025-02-22 16:06:26.734][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172652714.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/150123692.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172649157.xml"
biodb.DEBUG[2025-02-22 16:06:26.738][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:26.740][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-22 16:06:26.742][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:26.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:26.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:26.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:26.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:26.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:26.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:26.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:26.760][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.770][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.771][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.773][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.780][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.781][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.790][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.791][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.800][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.801][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.810][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.811][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.820][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:26.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:26.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.825][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:26.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.830][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:26.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:26.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.833][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:26.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:26.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:26.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:26.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.843][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:26.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:26.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:26.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:26.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:26.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:26.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.860][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:26.861][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:26.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.863][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.869][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:26.871][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:26.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:26.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.879][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:26.880][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:26.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.883][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:26.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:26.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.889][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:26.890][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:26.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:26.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.899][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:26.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:26.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.913][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:26.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:26.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.928][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:26.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:26.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.957][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:26.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:26.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:26.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:26.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:26.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:26.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:26.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:26.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:27.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:27.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:27.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:27.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:27.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:27.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:27.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:27.025][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.026][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.029][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.035][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.036][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.045][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.046][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.062][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.066][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.068][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.075][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.077][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.086][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.087][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.096][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:27.098][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:27.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.100][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.102][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:27.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:27.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.111][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:27.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.117][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:27.119][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:27.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:27.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:27.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.127][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:27.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:27.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.131][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.137][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:27.139][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:27.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.147][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:27.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:27.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.151][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.157][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:27.159][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:27.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:27.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.168][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:27.169][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:27.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.178][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:27.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.207][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:27.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.226][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:27.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:27.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:27.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:27.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:27.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:27.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:27.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:27.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:27.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:27.312][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.322][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.323][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.325][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.332][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.333][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.342][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.343][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.352][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.353][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.362][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.363][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.372][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:27.373][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:27.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.377][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.382][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:27.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:27.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.386][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:27.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:27.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.392][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:27.393][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:27.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.396][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:27.403][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:27.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.406][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:27.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:27.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.412][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:27.413][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:27.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.417][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:27.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.422][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:27.423][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:27.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:27.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:27.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.432][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:27.433][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:27.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.442][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:27.444][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:27.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.446][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:27.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.452][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:27.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.489][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:27.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:27.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:27.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.519][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:27.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:27.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:27.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:27.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:27.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:27.616][self$createEntryFromContent] Accession numbers: 172652714, 150123692, 172649157.
biodb.DEBUG[2025-02-22 16:06:27.618][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:27.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:27.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:27.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:27.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:27.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:27.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:27.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:27.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.644][private$selectFields]
biodb.TRACE[2025-02-22 16:06:27.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:27.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:27.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.657][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.659][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.665][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.681][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172652714].
biodb.DEBUG[2025-02-22 16:06:27.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:27.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:27.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:27.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:27.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:27.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:27.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:27.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.705][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.706][private$selectFields]
biodb.TRACE[2025-02-22 16:06:27.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:27.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:27.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.711][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.712][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.722][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.727][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:27.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [150123692].
biodb.DEBUG[2025-02-22 16:06:27.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:27.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:27.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:27.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:27.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:27.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:27.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:27.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.768][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.769][private$selectFields]
biodb.TRACE[2025-02-22 16:06:27.770][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:27.771][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:27.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.774][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.775][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.784][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.787][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.790][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:27.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.806][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172649157].
biodb.DEBUG[2025-02-22 16:06:27.807][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:27.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:27.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:27.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:27.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:27.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:27.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:27.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:27.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:27.854][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:27.857][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:27.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2025-02-22 16:06:27.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:27.865][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2025-02-22 16:06:27.867][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:27.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:27.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:27.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:27.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:27.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:27.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:27.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:27.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.900][private$selectFields]
biodb.TRACE[2025-02-22 16:06:27.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:27.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:27.904][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.916][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.922][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:27.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172653378].
biodb.DEBUG[2025-02-22 16:06:27.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:27.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:27.941][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:27.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:27.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:27.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:27.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.963][private$selectFields]
biodb.TRACE[2025-02-22 16:06:27.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:27.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:27.967][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.974][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:27.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.983][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.984][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:27.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:27.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:27.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:27.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172651172].
biodb.DEBUG[2025-02-22 16:06:28.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.026][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.039][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.041][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.045][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.046][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172649379].
biodb.DEBUG[2025-02-22 16:06:28.064][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:28.065][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:28.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:28.086][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:28.089][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:28.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2025-02-22 16:06:28.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:28.095][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2025-02-22 16:06:28.097][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:28.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.121][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.122][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.123][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.124][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.128][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.137][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.143][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-22 16:06:28.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.183][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.184][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.188][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.198][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.200][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.202][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.204][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.205][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-22 16:06:28.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.247][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.249][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.262][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.263][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.268][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-22 16:06:28.285][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:28.287][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:28.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:28.345][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:28.349][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:28.350][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-22 16:06:28.352][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:28.354][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-22 16:06:28.356][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:28.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.381][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.382][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.383][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.384][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.390][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.397][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.403][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.419][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172649379].
biodb.DEBUG[2025-02-22 16:06:28.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.432][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.445][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.448][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.449][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.461][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.467][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-22 16:06:28.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.507][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.508][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.521][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.524][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.529][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-22 16:06:28.546][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:28.548][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:28.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:28.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:28.572][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:28.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-22 16:06:28.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:28.578][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-22 16:06:28.580][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:28.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.605][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.606][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.607][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.608][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.610][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.619][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.622][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.623][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.627][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.643][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:28.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.668][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.669][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.675][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.678][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.679][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.683][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.684][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.690][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.706][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-22 16:06:28.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.738][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.739][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.740][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.744][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.745][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.752][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.754][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.755][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.761][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.778][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-22 16:06:28.779][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:28.780][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:28.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:28.826][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:28.829][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:28.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2025-02-22 16:06:28.832][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:28.835][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2025-02-22 16:06:28.837][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:28.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.862][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.863][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.864][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.865][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.869][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.874][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.878][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.883][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.884][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.900][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172650485].
biodb.DEBUG[2025-02-22 16:06:28.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.926][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.927][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.930][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.941][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.947][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:28.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172650464].
biodb.DEBUG[2025-02-22 16:06:28.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:28.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:28.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:28.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:28.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:28.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:28.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.987][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.988][private$selectFields]
biodb.TRACE[2025-02-22 16:06:28.989][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:28.990][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:28.992][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:28.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:28.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:28.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:28.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.002][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.003][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.005][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.006][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.009][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:29.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.025][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172650448].
biodb.DEBUG[2025-02-22 16:06:29.026][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:29.027][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:29.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:29.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:29.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:29.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2025-02-22 16:06:29.055][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:29.058][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2025-02-22 16:06:29.060][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:29.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.070][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.073][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:29.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.086][private$selectFields]
biodb.TRACE[2025-02-22 16:06:29.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:29.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:29.089][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.095][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.099][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.100][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.101][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.102][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.106][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.107][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:29.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172652714].
biodb.DEBUG[2025-02-22 16:06:29.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:29.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.154][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.156][private$selectFields]
biodb.TRACE[2025-02-22 16:06:29.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:29.159][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:29.160][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.162][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.172][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.173][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.178][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.194][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [150123692].
biodb.DEBUG[2025-02-22 16:06:29.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:29.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.221][private$selectFields]
biodb.TRACE[2025-02-22 16:06:29.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:29.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:29.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.235][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.236][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.237][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.242][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:29.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172649157].
biodb.DEBUG[2025-02-22 16:06:29.259][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:29.261][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:29.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:29.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:29.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:29.346][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:29.349][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:29.351][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:29.353][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:29.428][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:29.429][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:29.431][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:29.433][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:29.492][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:29.495][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2025-02-22 16:06:29.499][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2025-02-22 16:06:29.502][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:29.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:29.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.529][private$selectFields]
biodb.TRACE[2025-02-22 16:06:29.530][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:29.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:29.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.544][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.550][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:29.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.566][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172653378].
biodb.DEBUG[2025-02-22 16:06:29.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.591][private$selectFields]
biodb.TRACE[2025-02-22 16:06:29.592][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:29.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:29.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.597][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.605][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.606][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.607][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.611][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.612][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:29.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.628][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172651172].
biodb.DEBUG[2025-02-22 16:06:29.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:29.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.653][private$selectFields]
biodb.TRACE[2025-02-22 16:06:29.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:29.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:29.657][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.667][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.669][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:29.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.674][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:29.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:29.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:29.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:29.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172650485].
biodb.DEBUG[2025-02-22 16:06:29.691][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:29.693][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:29.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:29.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:29.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:29.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:29.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:29.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:29.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:29.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:29.728][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:29.729][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:29.731][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:29.805][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:29.806][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:29.808][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:29.809][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:29.860][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:29.863][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2025-02-22 16:06:29.868][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2025-02-22 16:06:29.871][private$loadEntries] Creating entries from ids [1]: "172643930".
biodb.DEBUG[2025-02-22 16:06:29.872][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:06:29.874][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172643930".
biodb.TRACE[2025-02-22 16:06:29.876][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-22 16:06:29.877][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:29.879][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:29.880][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:29.881][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:29.882][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:29.884][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-22 16:06:29.886][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML".
biodb.DEBUG[2025-02-22 16:06:29.888][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:29.890][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:29.891][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML".
biodb.TRACE[2025-02-22 16:06:29.963][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML).
biodb.TRACE[2025-02-22 16:06:30.044][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172643930.xml"
biodb.DEBUG[2025-02-22 16:06:30.047][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:30.048][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:06:30.050][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:30.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.077][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.078][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.088][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.089][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.098][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.099][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.102][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.108][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.109][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.118][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.120][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.122][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.129][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:30.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:30.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.134][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:30.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:30.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.139][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:30.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:30.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:30.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.149][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:30.150][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:30.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:30.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:30.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:30.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:30.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:30.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:30.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.169][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:30.171][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:30.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.175][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:30.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:30.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.179][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:30.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:30.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:30.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.190][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:30.191][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:30.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:30.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:30.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.200][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:30.201][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:30.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:30.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:30.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:30.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:30.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.225][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:30.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:30.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.255][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:30.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:30.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:30.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:30.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:30.337][self$createEntryFromContent] Accession numbers: 172643930.
biodb.DEBUG[2025-02-22 16:06:30.338][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:30.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.364][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.379][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.380][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.396][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643930].
biodb.DEBUG[2025-02-22 16:06:30.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.439][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.440][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.442][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.443][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.444][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.445][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.455][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.456][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.462][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:30.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:30.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.502][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.503][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.504][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.505][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.507][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.508][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.509][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.511][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.518][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.524][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:30.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-22 16:06:30.541][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:30.542][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:30.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.578][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:30.587][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:30.591][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:30.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-22 16:06:30.594][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:30.596][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-22 16:06:30.598][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:30.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.623][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.624][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.628][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.633][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.638][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.639][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.645][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:30.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.661][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647079].
biodb.DEBUG[2025-02-22 16:06:30.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.685][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.687][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.688][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.689][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.690][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.692][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.697][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.700][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.702][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.708][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:30.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.718][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647078].
biodb.DEBUG[2025-02-22 16:06:30.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.749][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.750][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.751][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.753][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.759][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.762][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.764][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.765][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.769][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-22 16:06:30.786][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:30.788][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:30.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.801][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:30.817][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:30.821][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:30.822][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-22 16:06:30.824][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:30.826][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-22 16:06:30.828][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:30.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.853][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.854][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.858][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.859][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.861][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.863][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.864][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.865][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.869][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.870][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.871][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.872][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.876][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:30.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.886][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:30.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.915][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.916][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.918][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.920][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.921][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.922][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.931][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.932][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.936][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.938][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:30.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.953][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-22 16:06:30.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:30.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:30.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:30.963][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:30.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:30.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:30.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:30.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.978][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.979][private$selectFields]
biodb.TRACE[2025-02-22 16:06:30.980][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:30.981][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:30.982][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:30.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.994][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:30.995][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.996][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:30.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:30.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.000][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:31.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-22 16:06:31.017][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:31.018][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:31.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:31.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:31.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:31.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:31.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:31.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:31.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:31.062][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:31.066][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:31.067][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:31.069][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:31.139][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:31.140][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:31.142][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:31.143][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:31.195][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:31.198][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2025-02-22 16:06:31.203][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2025-02-22 16:06:31.206][private$loadEntries] Creating entries from ids [1]: "130004307".
biodb.DEBUG[2025-02-22 16:06:31.208][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:06:31.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "130004307".
biodb.TRACE[2025-02-22 16:06:31.211][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-22 16:06:31.212][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:31.214][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:31.215][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:31.216][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:31.217][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:31.218][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-22 16:06:31.222][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307/XML".
biodb.DEBUG[2025-02-22 16:06:31.226][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:31.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:31.228][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307/XML".
biodb.TRACE[2025-02-22 16:06:31.299][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307/XML).
biodb.TRACE[2025-02-22 16:06:31.382][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/130004307.xml"
biodb.DEBUG[2025-02-22 16:06:31.385][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:31.386][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:06:31.388][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:31.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:31.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:31.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:31.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:31.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:31.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:31.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:31.405][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.406][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.414][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.416][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.424][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.426][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.434][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.436][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.444][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.446][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.454][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.456][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.464][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:31.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:31.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.469][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:31.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:31.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:31.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:31.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:31.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.484][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:31.485][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:31.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.488][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:31.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.506][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:31.507][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:31.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:31.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.516][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:31.518][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:31.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.522][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:31.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:31.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.527][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:31.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:31.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:31.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.537][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:31.539][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:31.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:31.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.548][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:31.549][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:31.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.551][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.558][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:31.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.572][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:31.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:31.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.587][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:31.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:31.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.602][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:31.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:31.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.616][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:31.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:31.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:31.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:31.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:31.684][self$createEntryFromContent] Accession numbers: 130004307.
biodb.DEBUG[2025-02-22 16:06:31.686][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:31.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:31.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:31.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:31.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:31.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:31.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:31.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.712][private$selectFields]
biodb.TRACE[2025-02-22 16:06:31.713][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:31.714][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:31.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.726][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.727][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.730][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.732][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.733][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:31.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647079].
biodb.DEBUG[2025-02-22 16:06:31.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:31.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:31.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:31.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:31.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:31.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:31.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:31.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.775][private$selectFields]
biodb.TRACE[2025-02-22 16:06:31.776][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:31.777][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:31.778][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.789][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.790][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.796][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:31.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647078].
biodb.DEBUG[2025-02-22 16:06:31.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:31.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:31.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:31.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:31.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:31.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:31.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:31.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.837][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.838][private$selectFields]
biodb.TRACE[2025-02-22 16:06:31.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:31.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:31.841][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.842][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.844][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.847][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.848][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.852][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.853][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:31.854][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.855][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.859][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:31.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:31.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:31.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-22 16:06:31.876][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:31.877][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:31.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:31.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:31.882][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:31.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:31.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:31.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:31.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:31.899][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:31.903][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:31.910][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:31.913][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-22 16:06:31.983][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-22 16:06:31.985][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-22 16:06:31.986][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-22 16:06:31.988][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-22 16:06:32.044][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-22 16:06:32.047][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2025-02-22 16:06:32.052][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2025-02-22 16:06:32.055][private$loadEntries] Creating entries from ids [2]: "172652015, 172652012".
biodb.DEBUG[2025-02-22 16:06:32.056][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-22 16:06:32.058][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172652015, 172652012".
biodb.TRACE[2025-02-22 16:06:32.060][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-22 16:06:32.061][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-22 16:06:32.063][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:32.064][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:32.065][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-22 16:06:32.066][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-22 16:06:32.068][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-22 16:06:32.070][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172652015,172652012/XML".
biodb.DEBUG[2025-02-22 16:06:32.073][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-22 16:06:32.074][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-22 16:06:32.076][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172652015,172652012/XML".
biodb.TRACE[2025-02-22 16:06:32.167][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172652015,172652012/XML).
biodb.TRACE[2025-02-22 16:06:32.304][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172652015.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172652012.xml"
biodb.DEBUG[2025-02-22 16:06:32.307][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-22 16:06:32.309][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-22 16:06:32.311][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-22 16:06:32.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:32.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:32.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:32.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:32.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:32.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:32.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:32.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.337][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.339][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.347][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.348][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.357][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.358][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.367][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.368][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.377][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.378][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.381][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.387][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:32.388][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:32.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.392][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:32.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.397][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:32.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:32.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.400][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:32.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:32.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:32.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:32.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:32.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.417][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:32.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:32.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:32.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.427][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:32.428][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:32.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:32.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:32.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.436][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:32.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:32.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:32.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:32.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.446][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:32.448][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:32.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:32.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:32.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.456][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:32.458][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:32.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:32.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:32.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.466][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:32.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.480][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:32.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.495][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:32.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.509][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:32.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:32.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:32.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:32.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:32.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:32.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:32.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:32.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:32.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:32.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:32.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:32.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.594][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.600][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.602][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.610][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.612][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.620][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.622][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.630][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.631][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.640][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.641][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.650][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:32.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:32.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.655][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-22 16:06:32.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:32.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.670][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:32.672][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:32.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:32.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:32.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.681][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:32.683][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:32.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.685][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:32.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:32.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.697][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:32.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.702][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:32.704][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:32.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.708][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:32.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:32.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.713][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:32.714][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:32.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.717][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-22 16:06:32.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:32.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.723][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:32.725][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:32.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:32.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:32.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.734][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:32.735][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:32.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-22 16:06:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-22 16:06:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-22 16:06:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:32.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-22 16:06:32.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:32.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.803][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-22 16:06:32.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:32.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:32.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.827][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:32.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:32.886][self$createEntryFromContent] Accession numbers: 172652015, 172652012.
biodb.DEBUG[2025-02-22 16:06:32.887][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:32.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:32.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:32.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:32.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:32.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:32.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:32.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:32.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:32.913][private$selectFields]
biodb.TRACE[2025-02-22 16:06:32.914][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:32.915][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:32.916][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:32.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.922][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.927][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:32.928][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:32.930][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.931][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.933][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.934][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:32.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172652714].
biodb.DEBUG[2025-02-22 16:06:32.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:32.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:32.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:32.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:32.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:32.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:32.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:32.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.975][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:32.976][private$selectFields]
biodb.TRACE[2025-02-22 16:06:32.977][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:32.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:32.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:32.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.986][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.987][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.989][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:32.992][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:32.993][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.994][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:32.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:32.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:32.998][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:32.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.014][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172652015].
biodb.DEBUG[2025-02-22 16:06:33.015][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.038][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.039][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.040][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.044][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.045][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.049][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.050][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.055][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.057][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.059][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.061][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172652012].
biodb.DEBUG[2025-02-22 16:06:33.086][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:33.087][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:33.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:33.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:33.137][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:33.138][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2025-02-22 16:06:33.140][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:33.142][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2025-02-22 16:06:33.144][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:33.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.171][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.172][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.174][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.175][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.180][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.181][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.185][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.186][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.192][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.209][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172653378].
biodb.DEBUG[2025-02-22 16:06:33.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.236][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.237][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.238][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.239][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.248][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.252][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.258][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.274][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172651172].
biodb.DEBUG[2025-02-22 16:06:33.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.300][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.305][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.309][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.314][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.315][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.321][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.337][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172650485].
biodb.DEBUG[2025-02-22 16:06:33.339][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:33.340][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:33.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:33.361][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:33.364][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:33.366][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2025-02-22 16:06:33.367][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:33.370][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2025-02-22 16:06:33.372][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:33.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.397][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.398][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.399][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.400][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.401][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.406][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.412][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.413][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.414][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.419][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.435][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643930].
biodb.DEBUG[2025-02-22 16:06:33.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.461][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.476][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.478][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.481][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.482][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.506][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:33.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.531][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.532][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.533][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.547][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.548][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.549][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.554][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-22 16:06:33.572][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:33.573][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:33.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:33.618][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:33.621][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:33.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-22 16:06:33.624][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:33.626][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-22 16:06:33.628][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:33.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.653][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.654][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.670][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.671][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.672][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.676][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647079].
biodb.DEBUG[2025-02-22 16:06:33.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.717][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.719][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.720][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.721][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.726][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.732][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.733][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.739][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647078].
biodb.DEBUG[2025-02-22 16:06:33.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.781][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.796][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.802][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.818][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-22 16:06:33.819][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:33.820][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:33.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:33.842][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:33.845][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:33.847][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-22 16:06:33.848][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:33.850][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-22 16:06:33.852][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:33.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.877][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.878][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.881][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.882][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.883][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.884][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.886][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.891][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.894][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.900][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-22 16:06:33.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:33.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:33.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:33.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:33.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.949][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.951][private$selectFields]
biodb.TRACE[2025-02-22 16:06:33.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:33.953][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:33.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.962][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.967][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:33.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.973][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:33.989][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-22 16:06:33.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:33.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:33.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:33.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:34.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.014][private$selectFields]
biodb.TRACE[2025-02-22 16:06:34.015][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:34.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:34.018][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.024][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.030][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.031][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.036][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:34.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.052][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-22 16:06:34.053][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:34.055][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:34.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:34.100][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:34.104][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:34.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2025-02-22 16:06:34.107][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:34.113][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2025-02-22 16:06:34.116][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:34.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.142][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.143][private$selectFields]
biodb.TRACE[2025-02-22 16:06:34.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:34.145][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:34.146][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.147][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.151][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.156][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.157][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.158][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.164][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647079].
biodb.DEBUG[2025-02-22 16:06:34.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.205][private$selectFields]
biodb.TRACE[2025-02-22 16:06:34.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:34.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:34.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.213][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.218][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.219][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.220][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.227][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172647078].
biodb.DEBUG[2025-02-22 16:06:34.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.277][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.278][private$selectFields]
biodb.TRACE[2025-02-22 16:06:34.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:34.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:34.281][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.292][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.293][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.299][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-22 16:06:34.316][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:34.317][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:34.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:34.339][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:34.342][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:34.344][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2025-02-22 16:06:34.353][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:34.356][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2025-02-22 16:06:34.358][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:34.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:34.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.385][private$selectFields]
biodb.TRACE[2025-02-22 16:06:34.386][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:34.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:34.389][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.401][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.402][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.403][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.406][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.407][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:34.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172652714].
biodb.DEBUG[2025-02-22 16:06:34.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:34.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.447][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.448][private$selectFields]
biodb.TRACE[2025-02-22 16:06:34.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:34.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:34.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.463][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.469][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:34.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.485][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172652015].
biodb.DEBUG[2025-02-22 16:06:34.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:34.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.510][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.511][private$selectFields]
biodb.TRACE[2025-02-22 16:06:34.512][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:34.513][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:34.514][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.517][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.524][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.526][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-22 16:06:34.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.532][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-22 16:06:34.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.543][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172652012].
biodb.DEBUG[2025-02-22 16:06:34.549][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:34.550][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:34.573][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:34.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.578][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:34.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:34.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:34.588][biodb::testThat]
biodb.INFO [2025-02-22 16:06:34.589][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-02-22 16:06:34.590][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:34.591][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:34.595][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:34.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:34.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.600][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-22 16:06:34.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-22 16:06:34.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.605][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.610][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:34.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:34.665][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:34.668][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:34.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-22 16:06:34.671][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:34.673][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-22 16:06:34.676][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:34.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:34.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:34.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:34.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:34.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:34.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:34.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:34.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:34.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:34.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:34.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:34.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:34.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:34.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:34.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:34.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:34.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:34.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:34.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:34.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:34.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:34.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:34.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:34.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:34.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:34.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:34.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:34.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:34.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:34.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:34.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:34.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:34.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:34.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:34.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:34.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:34.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:34.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:34.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:34.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:34.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:34.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:34.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.785][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:34.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:34.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.790][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:34.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:34.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:34.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:34.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:34.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:34.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.814][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:34.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:34.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.828][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:34.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:34.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:34.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:34.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:34.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:34.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:34.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.852][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:34.853][private$selectFields]
biodb.TRACE[2025-02-22 16:06:34.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:34.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:34.857][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:34.858][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:34.859][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:34.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.863][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:34.864][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:34.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.867][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:34.869][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:34.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.872][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:34.873][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:34.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.877][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:34.878][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:34.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.882][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:34.883][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:34.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:34.888][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:34.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.890][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:34.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:34.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.895][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.896][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:34.897][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:34.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.900][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:34.902][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:34.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.905][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:34.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:34.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:34.916][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:34.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.920][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.924][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:34.925][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:34.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.929][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:34.930][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:34.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.933][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:34.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:34.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.938][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:34.939][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:34.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.943][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:34.944][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:34.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.947][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:34.949][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:34.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.952][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:34.953][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:34.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.957][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:34.958][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:34.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.961][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:34.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:34.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:34.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:34.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.971][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:34.972][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:34.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.975][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:34.976][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:34.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.979][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.980][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:34.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.983][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:34.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:34.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.988][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.989][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:34.990][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:34.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:34.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:34.997][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:34.998][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.000][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.002][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.003][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.004][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.008][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:35.009][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:35.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.015][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.016][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.018][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.019][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.021][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.024][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.025][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.029][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.030][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.033][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.035][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.038][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.039][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.043][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.044][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.048][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.052][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.053][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.056][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.058][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.066][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.067][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.075][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.076][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.080][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.081][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.084][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.085][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.191][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.226][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.231][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172649379, 3-(4-pyrimidin-5-ylpyrazol-1-yl)propan-1-ol, 3-[4-(5-pyrimidinyl)-1-pyrazolyl]-1-propanol, 3-(4-pyrimidin-5-ylpyrazol-1-yl)propan-1-ol, 3-(4-pyrimidin-5-ylpyrazol-1-yl)propan-1-ol, ...].
biodb.DEBUG[2025-02-22 16:06:35.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:35.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:35.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:35.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:35.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:35.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:35.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.469][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.502][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:35.504][private$selectFields]
biodb.TRACE[2025-02-22 16:06:35.505][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:35.506][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:35.507][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:35.508][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.512][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.513][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.514][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.518][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.519][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.521][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.522][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.523][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.526][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.527][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.528][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.532][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.533][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.536][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.542][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.544][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.558][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.560][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.565][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.573][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.578][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.579][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.583][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.586][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.587][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.589][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.592][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.593][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.596][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.597][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.598][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.601][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.602][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.603][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.607][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.608][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.611][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.612][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.616][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.617][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.619][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.620][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.625][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.626][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.633][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.634][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.636][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.639][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.640][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.642][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.647][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.648][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.657][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.658][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.659][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.661][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.663][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.664][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.667][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:35.669][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:35.670][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.674][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.676][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.679][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.680][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.684][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.685][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.688][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.690][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.693][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.694][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.698][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.702][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.704][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.707][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.708][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.712][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.713][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.716][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.721][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.722][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.726][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.730][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.732][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.735][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.736][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.740][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.741][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.745][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:35.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:35.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:35.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:35.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:35.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:35.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:35.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:35.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.842][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:35.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:35.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.876][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.881][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:35.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:35.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.919][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.924][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:35.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.961][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:35.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.971][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:35.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:35.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:35.994][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-02-22 16:06:35.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:35.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:35.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:36.004][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:36.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:36.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:36.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.099][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.161][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:36.162][private$selectFields]
biodb.TRACE[2025-02-22 16:06:36.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:36.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:36.166][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:36.167][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.172][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.173][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.175][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.176][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.177][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.181][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.182][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.190][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.191][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.195][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.200][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.201][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.204][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.205][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.209][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.210][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.214][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.215][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.223][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.234][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.235][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.238][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.240][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.248][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.249][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.253][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.254][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.257][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.259][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.262][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.263][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.267][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.268][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.271][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.281][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.282][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.285][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.287][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.290][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.296][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.299][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.300][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.308][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.310][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.313][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.314][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.318][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:36.319][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:36.320][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.321][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.325][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.326][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.328][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.330][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.331][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.341][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.343][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.347][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.348][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.352][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.353][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.357][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.360][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.363][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.366][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.368][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.371][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.372][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.376][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.377][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.381][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.385][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.387][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.395][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.396][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.400][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.401][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.404][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.536][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.541][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.545][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.579][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.612][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.643][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-02-22 16:06:36.644][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:36.646][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:36.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:36.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:36.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:36.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:36.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:36.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:36.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:36.668][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:36.671][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:36.673][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-22 16:06:36.674][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:36.676][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-22 16:06:36.678][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:36.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:36.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:36.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:36.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:36.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:36.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:36.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:36.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.859][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:36.860][private$selectFields]
biodb.TRACE[2025-02-22 16:06:36.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:36.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:36.863][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:36.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.869][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.870][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.874][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.875][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.879][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.880][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.882][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.883][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.884][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.887][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.888][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.889][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.891][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.893][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.899][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.901][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.907][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.908][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.911][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.915][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.921][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.924][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.925][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:36.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.930][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.931][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:36.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.935][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.936][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:36.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.939][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:36.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:36.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.944][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.945][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:36.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.948][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.949][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.950][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:36.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.953][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.955][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:36.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.957][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.958][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.959][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:36.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.962][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.963][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.964][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:36.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.966][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.967][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:36.969][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:36.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.972][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:36.973][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:36.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:36.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.980][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.981][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:36.983][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:36.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.985][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.986][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:36.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.991][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:36.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:36.995][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:36.997][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:36.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:36.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.005][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.006][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.010][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.011][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.014][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:37.016][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:37.017][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.020][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.021][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.023][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.025][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.026][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.027][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.030][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.031][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.032][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.035][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.037][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.039][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.040][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.041][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.053][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.059][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.060][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.073][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.081][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.082][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.083][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.087][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.088][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.090][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.091][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.208][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.234][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.244][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.344][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-22 16:06:37.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:37.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:37.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:37.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:37.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:37.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:37.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:37.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.426][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.445][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.473][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.512][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:37.513][private$selectFields]
biodb.TRACE[2025-02-22 16:06:37.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:37.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:37.516][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:37.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.530][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.532][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.535][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.537][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.540][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.542][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.544][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.545][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.546][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.550][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.551][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.555][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.560][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.561][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.564][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.566][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.569][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.571][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.573][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.574][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.579][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.580][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.583][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.585][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.589][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.593][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.594][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.596][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.597][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.598][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.601][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.602][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.607][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.608][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.611][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.613][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.616][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.617][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.621][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.622][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.626][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.627][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.630][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.632][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.645][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.646][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.649][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.650][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.657][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.659][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.660][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.667][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.668][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.669][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.673][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.674][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.676][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.677][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:37.679][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:37.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.681][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.684][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.686][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.689][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.690][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.693][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.694][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.695][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.699][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.700][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.703][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.704][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.708][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.721][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.722][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.723][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.727][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.731][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.735][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.740][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.745][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.746][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.750][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.751][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:37.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.755][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:37.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:37.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:37.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:37.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:37.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:37.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.847][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:37.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:37.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.886][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.891][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:37.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:37.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.966][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:37.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:37.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:37.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:37.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.023][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-22 16:06:38.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:38.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:38.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:38.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:38.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:38.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:38.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:38.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.125][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.179][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.193][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:38.194][private$selectFields]
biodb.TRACE[2025-02-22 16:06:38.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:38.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:38.197][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:38.199][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.203][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.205][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.208][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.209][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.213][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.214][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.219][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.220][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.223][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.224][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.225][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.229][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.230][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.233][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.235][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.238][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.239][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.243][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.244][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.247][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.249][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.257][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.266][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.268][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.271][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.272][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.276][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.277][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.279][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.281][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.282][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.285][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.287][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.290][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.291][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.295][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.296][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.299][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.301][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.304][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.313][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.318][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.319][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.323][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.324][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.336][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.340][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.342][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.345][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.349][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.350][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.351][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.355][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.356][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.360][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:38.361][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:38.362][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.364][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.367][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.368][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.372][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.373][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.377][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.378][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.382][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.383][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.387][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.388][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.390][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.391][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.392][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.396][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.397][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.402][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.404][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.405][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.406][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.409][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.410][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.411][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.419][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.421][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.423][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.429][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.430][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.434][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.435][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.439][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:38.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.537][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.547][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.571][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.575][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.580][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.585][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.652][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.657][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.667][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-22 16:06:38.680][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:38.681][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:38.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:38.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:38.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:38.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:38.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:38.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:38.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:38.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:38.713][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:38.715][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-22 16:06:38.716][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:38.718][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-22 16:06:38.720][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:38.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:38.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:38.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:38.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:38.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:38.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:38.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:38.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.832][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.837][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.885][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:38.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:38.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.904][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:38.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.909][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:38.910][private$selectFields]
biodb.TRACE[2025-02-22 16:06:38.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:38.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:38.913][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:38.914][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.919][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.920][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:38.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.924][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.925][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:38.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.928][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.930][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:38.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.933][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.934][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:38.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.938][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.939][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:38.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.942][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:38.944][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:38.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:38.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:38.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.952][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:38.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.957][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:38.958][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:38.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.961][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:38.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:38.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.971][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:38.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:38.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:38.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.979][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.980][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.981][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:38.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.985][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.986][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:38.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.988][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.989][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:38.991][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:38.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.994][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:38.995][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:38.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:38.997][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:38.999][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.000][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.002][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.003][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.005][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.008][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.009][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.013][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.014][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.016][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.017][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.019][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.021][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.022][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.026][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.027][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.028][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.030][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.033][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.036][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.037][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.041][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.042][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.050][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.059][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.060][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.061][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.063][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.064][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.066][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.068][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.069][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.070][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.074][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:39.075][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:39.076][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.080][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.081][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.082][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.086][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.087][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.090][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.092][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.095][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.096][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.099][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.100][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.101][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.104][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.108][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.125][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.127][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.131][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.136][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.137][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.139][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.140][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.145][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.150][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.151][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.155][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.156][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.160][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.294][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.299][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.304][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.367][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172649379, 3-(4-pyrimidin-5-ylpyrazol-1-yl)propan-1-ol, 3-[4-(5-pyrimidinyl)-1-pyrazolyl]-1-propanol, 3-(4-pyrimidin-5-ylpyrazol-1-yl)propan-1-ol, 3-(4-pyrimidin-5-ylpyrazol-1-yl)propan-1-ol, ...].
biodb.DEBUG[2025-02-22 16:06:39.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:39.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:39.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:39.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:39.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:39.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:39.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:39.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.502][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.579][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.588][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:39.589][private$selectFields]
biodb.TRACE[2025-02-22 16:06:39.590][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:39.591][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:39.593][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:39.594][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.599][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.600][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.603][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.605][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.607][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.608][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.609][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.613][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.614][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.618][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.619][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.621][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.622][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.624][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.627][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.628][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.637][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.638][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.641][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.642][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.645][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.646][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.651][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.660][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.661][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.665][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.666][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.669][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.671][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.674][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.675][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.679][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.680][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.684][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.685][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.688][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.690][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.693][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.694][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.698][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.699][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.702][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.712][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.713][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.716][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.718][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.721][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.722][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.726][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.731][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.740][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.741][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.744][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.746][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.749][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.750][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:39.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.754][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:39.755][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:39.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.757][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.761][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.762][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.764][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.765][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.767][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.770][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.771][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.775][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.776][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.780][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.781][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.784][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.798][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.800][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.803][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:39.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.812][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:39.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:39.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.817][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:39.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.822][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.823][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:39.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.826][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.827][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:39.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.831][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:39.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:39.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:39.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:39.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:39.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:39.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:39.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:39.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:39.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:39.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:39.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.972][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.981][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:39.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:39.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:39.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.060][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.069][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.081][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-02-22 16:06:40.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:40.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:40.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:40.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:40.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:40.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:40.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:40.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.182][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.186][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.259][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:40.260][private$selectFields]
biodb.TRACE[2025-02-22 16:06:40.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:40.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:40.263][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:40.264][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.269][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.270][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.272][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.274][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.275][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.278][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.280][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.282][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.283][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.284][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.288][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.289][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.292][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.310][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.314][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.315][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.319][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.328][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.337][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.338][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.339][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.343][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.344][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.348][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.349][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.353][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.357][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.359][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.362][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.363][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.367][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.368][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.372][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.373][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.376][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.377][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.381][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.382][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.387][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.392][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.395][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.396][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.400][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.409][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.414][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.415][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.419][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.420][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.423][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.425][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.428][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.429][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.433][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:40.434][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:40.435][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.439][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.440][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.441][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.443][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.445][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.446][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.449][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.451][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.454][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.455][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.457][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.459][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.460][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.462][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.463][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.468][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.469][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.472][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.476][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.477][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.479][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.481][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.486][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.487][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.488][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.492][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.496][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.501][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.502][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.506][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.507][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.510][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:40.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.608][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.642][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.760][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-02-22 16:06:40.761][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:40.762][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:40.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:40.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:40.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:40.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:40.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:40.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:40.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:40.785][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:40.788][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:40.790][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-22 16:06:40.791][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:40.793][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-22 16:06:40.796][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:40.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:40.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:40.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:40.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:40.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:40.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:40.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:40.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:40.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:40.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:40.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.902][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:40.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:40.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:40.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.921][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:40.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:40.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:40.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:40.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.973][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:40.974][private$selectFields]
biodb.TRACE[2025-02-22 16:06:40.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:40.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:40.978][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:40.979][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:40.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:40.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.982][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.984][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.985][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:40.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.988][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.990][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:40.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.993][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.994][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:40.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:40.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:40.998][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:40.999][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.002][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.003][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.006][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.010][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.015][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.017][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.020][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.021][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.022][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.029][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.035][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.043][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.044][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.045][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.049][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.050][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.053][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.055][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.057][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.058][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.063][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.064][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.066][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.067][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.069][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.071][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.072][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.073][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.075][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.077][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.078][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.080][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.081][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.083][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.086][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.087][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.100][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.102][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.103][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.107][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.108][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.110][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.113][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.114][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.118][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.119][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.123][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.127][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.131][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.132][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.134][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.137][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.138][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.142][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.143][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.146][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.147][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:41.148][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:41.149][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.151][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.154][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.155][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.159][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.160][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.162][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.163][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.164][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.168][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.169][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.173][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.174][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.177][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.181][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.182][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.183][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.187][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.188][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.191][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.193][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.196][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.204][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.206][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.214][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.215][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.216][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.219][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.220][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.222][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.225][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.227][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.373][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.398][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-22 16:06:41.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:41.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:41.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:41.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:41.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:41.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:41.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:41.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.582][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.587][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.640][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.645][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.654][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.659][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:41.660][private$selectFields]
biodb.TRACE[2025-02-22 16:06:41.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:41.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:41.663][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:41.665][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.669][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.671][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.674][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.675][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.679][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.680][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.683][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.685][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.688][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.689][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.693][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.702][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.703][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.707][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.708][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.712][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.713][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.730][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.731][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.735][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.736][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.739][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.741][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.744][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.745][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.749][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.750][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.752][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.754][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.755][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.758][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.759][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.762][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.763][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.764][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.768][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.769][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.772][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.786][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.788][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.791][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.792][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.800][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.805][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.810][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.811][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.814][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.816][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.818][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.819][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.820][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:41.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.824][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:41.825][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:41.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.831][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.832][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.835][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.837][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.840][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.841][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.849][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.851][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.854][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:41.855][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:41.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.859][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:41.860][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:41.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.865][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:41.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.868][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:41.869][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:41.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.872][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.873][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.874][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:41.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.877][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:41.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.881][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.889][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:41.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:41.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:41.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.900][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.901][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:41.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.905][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.906][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:41.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.910][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:41.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:41.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:41.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:41.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:41.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:41.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:41.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.005][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.126][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-22 16:06:42.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:42.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:42.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:42.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:42.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:42.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:42.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.256][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.260][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.293][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.332][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:42.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:42.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.337][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:42.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.341][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:42.343][private$selectFields]
biodb.TRACE[2025-02-22 16:06:42.344][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:42.345][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:42.346][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:42.347][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.349][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.352][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.353][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.355][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.357][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.358][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.360][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.361][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.363][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.366][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.367][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.371][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.372][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.375][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.377][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.382][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.384][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.390][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.391][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.395][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.396][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.404][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.412][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.413][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.415][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.418][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.419][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.421][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.423][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:42.424][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:42.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.426][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.427][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.432][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.433][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.437][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.438][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.441][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.443][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.446][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.447][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.451][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.452][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.460][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.461][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.465][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.469][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.471][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.483][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.493][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.494][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.496][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.499][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.502][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:42.503][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:42.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.507][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:42.508][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:42.509][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.510][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.514][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.515][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.518][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.520][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.523][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.524][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.528][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.529][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.532][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.534][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.536][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.542][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.543][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.546][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.547][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.550][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.551][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.552][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.554][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.556][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.559][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.564][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.565][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.573][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.574][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.575][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.579][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.580][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.584][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:42.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.694][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.704][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:42.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.724][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.729][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.733][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:42.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:42.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:42.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:42.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:42.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-22 16:06:42.834][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:42.835][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:42.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:42.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:42.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:42.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:42.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:42.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:42.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:42.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:42.902][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:42.905][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:42.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-22 16:06:42.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:42.911][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-22 16:06:42.913][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:42.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:42.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:42.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:42.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:42.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:42.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:42.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:42.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:42.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:42.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:42.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:42.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:42.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:42.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:42.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.013][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.018][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.079][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.088][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:43.089][private$selectFields]
biodb.TRACE[2025-02-22 16:06:43.091][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:43.092][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:43.093][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:43.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.096][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.098][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.099][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.100][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.104][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.105][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.107][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.109][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.110][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.114][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.115][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.118][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.120][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.122][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.123][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.124][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.131][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.137][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.138][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.142][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.145][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.150][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.151][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.161][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.162][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.165][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.167][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.169][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.170][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.175][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.176][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.180][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.181][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.184][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.186][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.188][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.189][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.190][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.194][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.195][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.199][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.200][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.204][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.213][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.215][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.218][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.223][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.225][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.229][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.239][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.240][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.244][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.245][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.249][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:43.250][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:43.251][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.252][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.256][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.257][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.261][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.262][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.266][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.267][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.271][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.272][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.276][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.277][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.279][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.281][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.282][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.285][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.290][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.295][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.296][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.300][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.301][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.305][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.306][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.311][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.319][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.320][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.322][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.324][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.325][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.328][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.460][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.527][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.578][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172647079, (4-amino-2,5-dimethyl-phenyl)-(azetidin-1-yl)methanone, (4-amino-2,5-dimethylphenyl)-(1-azetidinyl)methanone, (4-amino-2,5-dimethylphenyl)-(azetidin-1-yl)methanone, (4-azanyl-2,5-dimethyl-phenyl)-(azetidin-1-yl)methanone, ...].
biodb.DEBUG[2025-02-22 16:06:43.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:43.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:43.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:43.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:43.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:43.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:43.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:43.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.646][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.656][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.679][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.684][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.694][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.746][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:43.747][private$selectFields]
biodb.TRACE[2025-02-22 16:06:43.748][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:43.749][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:43.750][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:43.751][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.756][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.757][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.761][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.762][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.764][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.766][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.767][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.770][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.771][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.775][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.776][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.780][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.781][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.784][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.789][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.790][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.794][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.795][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.798][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.803][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.808][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.812][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.814][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.817][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.818][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.822][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.823][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.831][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.832][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.836][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.837][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.840][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.842][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.845][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.846][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.849][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.850][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.859][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.863][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.877][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.879][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.881][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.882][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.883][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.886][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.887][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.888][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.891][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.892][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.895][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.897][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.898][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.900][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.902][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.903][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.905][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.906][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.908][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.911][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:43.913][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:43.914][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.918][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.920][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:43.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.923][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.924][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:43.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.928][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.929][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:43.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.932][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.934][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:43.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.936][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.937][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.938][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:43.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.942][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:43.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:43.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:43.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:43.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:43.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.956][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:43.957][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:43.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.961][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:43.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:43.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.970][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:43.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:43.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:43.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.980][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.981][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:43.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.983][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.984][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.986][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:43.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.988][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.989][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:43.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:43.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:43.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:43.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:43.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.122][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.126][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.199][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.214][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172647078, (4-amino-2,3-dimethyl-phenyl)-(azetidin-1-yl)methanone, (4-amino-2,3-dimethylphenyl)-(1-azetidinyl)methanone, (4-amino-2,3-dimethylphenyl)-(azetidin-1-yl)methanone, (4-azanyl-2,3-dimethyl-phenyl)-(azetidin-1-yl)methanone, ...].
biodb.DEBUG[2025-02-22 16:06:44.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:44.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:44.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:44.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:44.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:44.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:44.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:44.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.343][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.348][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.372][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.376][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.410][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:44.411][private$selectFields]
biodb.TRACE[2025-02-22 16:06:44.412][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:44.413][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:44.414][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:44.416][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.421][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.422][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.425][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.427][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.430][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.431][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.435][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.436][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.439][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.441][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.443][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.444][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.450][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.455][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.457][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.458][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.459][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.462][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.463][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.466][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.472][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.476][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.477][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.478][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.482][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.483][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.486][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.487][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.491][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.492][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.496][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.497][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.499][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.500][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.501][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.505][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.506][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.509][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.511][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.514][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.515][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.519][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.523][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.528][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.532][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.533][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.534][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.536][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.537][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.543][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.547][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.548][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.550][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.551][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.553][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.555][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.556][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.557][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.561][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.562][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.564][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.565][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:44.567][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:44.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.572][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.574][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.577][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.578][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.582][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.583][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.586][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.588][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.591][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.592][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.596][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.605][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.606][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.609][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.610][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.611][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.614][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.616][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.619][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.620][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.624][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.625][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.627][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.633][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.634][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.645][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.647][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.651][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:44.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:44.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:44.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.819][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:44.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:44.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:44.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-02-22 16:06:44.895][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:44.896][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:44.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:44.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:44.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:44.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:44.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:44.910][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:44.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:44.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:44.922][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:44.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-22 16:06:44.925][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:44.927][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-22 16:06:44.930][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:44.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:44.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:44.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:44.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:44.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:44.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:44.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:44.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:44.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:44.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:44.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:44.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.038][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.043][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.102][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.106][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:45.108][private$selectFields]
biodb.TRACE[2025-02-22 16:06:45.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:45.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:45.111][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:45.112][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.117][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.118][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.122][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.123][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.125][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.126][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.128][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.131][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.133][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.136][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.137][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.140][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.150][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.152][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.155][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.156][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.169][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.170][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.178][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.180][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.182][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.183][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.184][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.187][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.192][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.194][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.196][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.197][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.198][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.201][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.202][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.203][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.207][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.208][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.210][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.211][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.212][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.216][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.222][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.231][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.232][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.233][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.237][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.238][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.246][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.251][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.255][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.256][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.260][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.261][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.264][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:45.266][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:45.267][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.268][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.271][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.273][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.276][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.277][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.281][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.282][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.285][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.287][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.290][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.291][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.295][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.296][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.309][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.310][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.313][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.327][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.328][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.332][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.333][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.336][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.338][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.340][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.341][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:45.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.482][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.487][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.492][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.555][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.560][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-22 16:06:45.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:45.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:45.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:45.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:45.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:45.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:45.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:45.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.663][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.691][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.758][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:45.759][private$selectFields]
biodb.TRACE[2025-02-22 16:06:45.760][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:45.761][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:45.762][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:45.763][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.765][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.768][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.769][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.773][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.774][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.778][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.779][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.782][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.783][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.787][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.788][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.793][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.796][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.798][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.801][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.802][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.806][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.807][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.810][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.819][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.827][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.828][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.830][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.835][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.838][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.839][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.843][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.844][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.848][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.852][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.853][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.854][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.858][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.859][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.862][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.864][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.867][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.869][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.872][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.873][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.881][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.891][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.892][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.895][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.900][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.905][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.906][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.914][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.916][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.919][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.920][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.924][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:45.925][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:45.926][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:45.928][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:45.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.931][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.932][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:45.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.936][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.937][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:45.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.941][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.942][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:45.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.945][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.947][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:45.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.950][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.951][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:45.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.955][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:45.956][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:45.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.958][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.959][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:45.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:45.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.963][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.965][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:45.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.969][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:45.970][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:45.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.972][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.973][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.975][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:45.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.977][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.978][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.979][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.982][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.983][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:45.984][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:45.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.986][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:45.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.991][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.992][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.993][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:45.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:45.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:45.997][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.998][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:45.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.002][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:46.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.144][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172641880, [(4S,5R)-5-ethyl-2,4-dihydroxy-tetrahydrofuran-3-yl] methanesulfonate, methanesulfonic acid [(4S,5R)-5-ethyl-2,4-dihydroxy-3-oxolanyl] ester, [(4S,5R)-5-ethyl-2,4-dihydroxyoxolan-3-yl] methanesulfonate, [(4S,5R)-5-ethyl-2,4-bis(oxidanyl)oxolan-3-yl] methanesulfonate, ...].
biodb.DEBUG[2025-02-22 16:06:46.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:46.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:46.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:46.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:46.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:46.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:46.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:46.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.359][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.364][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.412][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.427][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:46.428][private$selectFields]
biodb.TRACE[2025-02-22 16:06:46.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:46.430][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:46.431][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:46.432][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.437][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.438][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.442][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.443][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.446][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.448][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.451][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.452][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.456][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.457][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.460][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.462][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.474][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.476][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.488][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.493][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.494][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.496][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.498][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.499][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.502][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.504][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.507][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.508][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.511][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.512][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.513][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.516][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.518][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.521][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.522][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.527][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.530][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.532][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.535][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.536][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.546][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.549][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.550][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.552][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.554][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.555][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.563][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.568][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.569][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.572][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.573][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.577][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.578][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.582][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:46.583][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:46.584][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.585][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.589][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.590][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.593][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.595][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.598][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.599][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.609][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.610][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.612][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.616][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.617][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.621][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.626][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.627][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.635][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.637][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.640][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.646][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.650][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.656][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.659][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.661][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.664][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.665][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.669][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:46.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:46.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.762][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:46.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.801][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.806][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.811][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:46.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:46.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:46.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-02-22 16:06:46.910][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:46.911][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:46.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:46.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:46.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:46.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:46.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:46.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:46.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:46.938][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:46.942][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:46.943][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-22 16:06:46.945][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:46.947][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-22 16:06:46.949][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:46.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:46.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:46.953][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:46.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:46.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:46.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:46.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:46.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:46.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:46.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:46.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.065][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.108][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.137][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:47.138][private$selectFields]
biodb.TRACE[2025-02-22 16:06:47.139][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:47.140][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:47.141][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:47.142][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.146][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.147][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.148][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.151][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.152][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.153][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.156][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.158][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.160][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.161][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.162][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.166][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.167][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.169][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.171][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.175][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.177][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.180][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.181][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.185][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.186][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.190][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.199][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.209][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.210][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.213][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.214][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.218][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.219][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.222][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.224][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.226][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.230][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.231][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.234][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.236][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.239][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.240][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.244][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.245][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.248][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.250][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.253][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.266][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.267][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.268][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.272][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.273][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.281][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.290][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.295][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.296][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.300][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.301][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.304][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:47.306][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:47.307][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.310][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.311][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.313][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.316][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.317][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.321][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.322][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.325][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.327][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.330][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.331][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.335][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.344][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.349][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.350][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.353][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.362][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.363][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.372][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.373][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.377][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.378][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.382][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:47.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.480][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.495][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.510][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.529][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.534][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.606][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.611][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.621][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172647079, (4-amino-2,5-dimethyl-phenyl)-(azetidin-1-yl)methanone, (4-amino-2,5-dimethylphenyl)-(1-azetidinyl)methanone, (4-amino-2,5-dimethylphenyl)-(azetidin-1-yl)methanone, (4-azanyl-2,5-dimethyl-phenyl)-(azetidin-1-yl)methanone, ...].
biodb.DEBUG[2025-02-22 16:06:47.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:47.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:47.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:47.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:47.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:47.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:47.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:47.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.732][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.737][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.818][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:47.819][private$selectFields]
biodb.TRACE[2025-02-22 16:06:47.820][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:47.821][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:47.823][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:47.824][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.825][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.827][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.829][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.830][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.834][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.835][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.839][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.840][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.843][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.845][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.848][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.849][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.853][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.854][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.857][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.859][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.862][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.863][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.867][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.868][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.878][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.881][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.886][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.887][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.891][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.892][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.895][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.897][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.900][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.901][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.905][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.909][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.911][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.914][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.915][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.919][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.920][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:47.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.924][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.925][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:47.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.928][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.930][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:47.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.933][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:47.934][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:47.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.936][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:47.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:47.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:47.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.947][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:47.948][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:47.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.952][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.953][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:47.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:47.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.961][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:47.962][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:47.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.966][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:47.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.970][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.972][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:47.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.974][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.975][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.976][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:47.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.979][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.980][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.981][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:47.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.985][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:47.986][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:47.987][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:47.988][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:47.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.991][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.992][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.993][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:47.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:47.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:47.996][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.998][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:47.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.001][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.002][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.006][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.007][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.009][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.010][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.012][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.015][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.016][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.018][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.020][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.021][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.024][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.025][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.029][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.030][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.033][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.043][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.052][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.053][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.056][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.057][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.058][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.062][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:48.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.149][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.187][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.212][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.279][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172647078, (4-amino-2,3-dimethyl-phenyl)-(azetidin-1-yl)methanone, (4-amino-2,3-dimethylphenyl)-(1-azetidinyl)methanone, (4-amino-2,3-dimethylphenyl)-(azetidin-1-yl)methanone, (4-azanyl-2,3-dimethyl-phenyl)-(azetidin-1-yl)methanone, ...].
biodb.DEBUG[2025-02-22 16:06:48.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:48.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:48.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:48.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:48.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:48.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:48.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.421][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.426][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.483][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:48.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:48.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.487][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:48.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:48.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.492][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:48.493][private$selectFields]
biodb.TRACE[2025-02-22 16:06:48.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:48.496][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:48.497][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:48.498][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.503][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.504][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.507][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.509][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.511][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.512][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.513][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.517][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.518][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.521][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.523][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.526][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.531][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.532][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.535][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.537][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.540][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.541][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.545][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.549][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.550][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.552][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.554][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.563][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.572][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.575][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.577][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.578][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.582][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:48.583][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:48.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.588][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.592][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.593][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.596][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.598][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.600][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.602][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.603][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.607][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.608][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.612][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.613][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.615][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.617][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.618][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.623][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.626][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.628][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.631][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.632][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.636][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.640][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.645][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.646][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.655][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.656][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.660][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.661][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.664][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:48.666][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:48.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.669][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:48.670][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:48.672][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.676][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.677][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.681][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.682][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.685][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.686][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.687][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.690][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.691][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.692][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.694][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.696][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.697][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.700][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.702][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.705][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.708][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.710][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.711][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.714][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.716][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.718][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.719][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.720][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.724][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.728][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.732][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.736][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.738][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.739][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.742][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.744][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.746][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.747][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:48.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:48.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:48.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:48.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:48.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:48.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:48.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:48.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:48.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:48.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.883][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.888][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:48.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:48.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:48.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:48.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:48.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:48.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-02-22 16:06:48.998][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:48.999][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-22 16:06:49.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:49.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:49.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:49.011][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:49.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:49.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:49.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:49.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-22 16:06:49.025][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-22 16:06:49.027][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-22 16:06:49.028][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:49.030][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-22 16:06:49.032][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-22 16:06:49.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:49.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:49.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:49.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:49.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:49.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:49.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:49.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.134][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.139][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.149][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.168][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.201][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.206][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.211][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:49.212][private$selectFields]
biodb.TRACE[2025-02-22 16:06:49.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:49.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:49.215][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:49.216][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.221][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.222][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.225][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.226][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.228][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.231][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.232][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.234][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.237][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.238][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.242][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.243][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.253][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.261][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.262][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.265][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.267][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.275][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.276][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.284][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.285][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.287][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.288][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.290][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.293][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.294][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.298][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.299][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.301][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.302][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.304][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.307][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.308][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.312][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.313][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.316][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.318][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.321][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.322][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.325][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.326][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.327][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.330][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.332][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.335][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.336][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.340][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.341][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.344][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.362][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.364][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.372][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.374][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.377][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.379][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.381][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.382][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.383][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.386][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.387][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:49.388][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:49.390][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.391][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.394][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.396][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.399][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.400][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.404][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.405][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.409][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.410][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.414][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.415][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.417][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.418][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.420][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.423][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.424][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.432][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.434][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.437][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.442][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.443][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.447][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.448][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.453][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.456][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.457][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.461][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.462][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.466][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.554][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.598][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.602][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.607][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.679][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-22 16:06:49.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:49.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:49.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:49.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:49.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:49.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:49.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:49.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.816][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.821][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.893][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:49.894][private$selectFields]
biodb.TRACE[2025-02-22 16:06:49.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:49.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:49.898][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:49.899][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.900][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.903][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.905][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.908][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.909][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.913][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.914][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.917][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.918][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.919][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.922][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.924][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:49.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.927][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:49.928][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:49.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:49.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:49.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.937][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.938][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:49.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.940][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.941][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:49.943][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:49.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.945][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.946][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:49.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.952][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:49.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.954][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.955][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:49.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:49.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.960][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.961][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:49.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.965][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.966][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:49.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.968][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.969][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.971][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:49.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.974][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.975][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:49.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.979][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:49.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:49.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.982][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.983][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.985][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:49.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.988][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.989][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:49.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.993][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.994][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:49.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:49.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:49.998][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:49.999][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.002][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.004][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.006][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.007][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.008][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.015][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.016][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.018][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.020][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.021][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.022][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.026][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.027][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.029][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.035][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.043][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.044][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.045][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.049][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.050][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.053][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.055][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.057][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.058][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:50.059][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:50.061][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.065][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.066][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.070][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.071][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.074][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.076][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.078][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.079][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.080][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.084][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.085][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.087][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.088][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.092][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.096][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.098][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.099][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.101][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.102][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.104][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.106][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.107][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.110][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.116][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.117][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.125][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.127][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.129][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.130][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.139][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.143][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:50.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.244][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.278][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.283][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.288][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.322][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172641880, [(4S,5R)-5-ethyl-2,4-dihydroxy-tetrahydrofuran-3-yl] methanesulfonate, methanesulfonic acid [(4S,5R)-5-ethyl-2,4-dihydroxy-3-oxolanyl] ester, [(4S,5R)-5-ethyl-2,4-dihydroxyoxolan-3-yl] methanesulfonate, [(4S,5R)-5-ethyl-2,4-bis(oxidanyl)oxolan-3-yl] methanesulfonate, ...].
biodb.DEBUG[2025-02-22 16:06:50.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:50.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:50.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:50.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:50.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:50.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:50.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.487][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.491][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.573][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:50.574][private$selectFields]
biodb.TRACE[2025-02-22 16:06:50.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-22 16:06:50.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-22 16:06:50.578][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:50.579][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.584][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.585][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.589][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.590][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.593][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.595][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.599][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.603][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.604][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.606][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.611][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.613][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.621][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.623][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.626][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.631][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.632][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.636][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.645][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.647][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.650][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.655][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.656][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.659][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.664][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.665][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.669][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.670][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.674][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.675][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.678][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.680][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.683][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.684][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.688][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.689][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.691][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.697][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.698][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.702][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.703][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.707][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.708][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.716][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.717][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.725][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.727][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.730][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.731][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.735][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.736][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-22 16:06:50.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.740][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:50.741][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-22 16:06:50.742][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.747][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.748][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.751][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.753][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.756][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.757][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.759][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.761][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.762][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.764][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.765][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.767][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.770][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.771][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.784][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.785][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.789][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.795][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.798][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:50.799][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.804][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:50.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.807][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.809][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:50.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.812][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.813][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:50.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.815][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.817][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-22 16:06:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-22 16:06:50.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-22 16:06:50.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-22 16:06:50.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-22 16:06:50.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-22 16:06:50.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-22 16:06:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-22 16:06:50.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-22 16:06:50.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-22 16:06:50.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-22 16:06:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-22 16:06:50.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-22 16:06:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-22 16:06:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:50.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-22 16:06:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:51.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:51.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-22 16:06:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-22 16:06:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:51.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-22 16:06:51.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:51.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:51.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-22 16:06:51.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-02-22 16:06:51.068][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-22 16:06:51.069][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-22 16:06:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:51.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:51.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-22 16:06:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:51.090][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-22 16:06:51.091][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2025-02-22 16:06:51.093][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2025-02-22 16:06:51.094][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-22 16:06:51.095][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.097][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.099][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-22 16:06:51.106][biodb::testContext]
biodb.INFO [2025-02-22 16:06:51.107][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-22 16:06:51.108][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2025-02-22 16:06:51.109][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-22 16:06:51.110][biodb::testContext]
biodb.INFO [2025-02-22 16:06:51.113][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2025-02-22 16:06:51.115][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-22 16:06:51.121][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:06:51.122][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-22 16:06:51.123][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-22 16:06:51.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.128][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-22 16:06:51.129][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-22 16:06:51.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.133][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-22 16:06:51.135][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-22 16:06:51.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.139][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-22 16:06:51.140][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-22 16:06:51.141][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-22 16:06:51.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.146][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-22 16:06:51.147][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-22 16:06:51.148][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-22 16:06:51.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.153][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-22 16:06:51.154][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-22 16:06:51.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.158][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-22 16:06:51.159][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-22 16:06:51.160][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-22 16:06:51.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.165][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-22 16:06:51.166][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-22 16:06:51.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.170][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-22 16:06:51.172][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-22 16:06:51.173][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-22 16:06:51.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.177][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-22 16:06:51.178][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-22 16:06:51.180][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-22 16:06:51.181][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-22 16:06:51.182][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-22 16:06:51.183][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-22 16:06:51.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.187][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-22 16:06:51.189][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-22 16:06:51.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.193][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-22 16:06:51.194][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-22 16:06:51.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.199][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-22 16:06:51.200][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-22 16:06:51.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.204][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-22 16:06:51.205][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-22 16:06:51.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.210][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-22 16:06:51.211][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-22 16:06:51.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.215][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-22 16:06:51.217][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-22 16:06:51.220][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-22 16:06:51.221][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.224][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-22 16:06:51.226][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-22 16:06:51.227][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-22 16:06:51.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.233][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-22 16:06:51.235][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.237][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-22 16:06:51.238][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.239][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:51.240][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.242][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.243][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.244][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.245][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-22 16:06:51.246][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:51.248][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.249][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-22 16:06:51.250][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:51.251][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.252][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.254][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:06:51.254][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:06:51.254][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:06:51.254][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-22 16:06:51.254][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-22 16:06:51.255][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:06:51.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.257][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.258][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:51.259][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.260][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.262][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.263][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.264][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:51.265][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:51.266][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.267][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.269][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-22 16:06:51.271][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.272][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-22 16:06:51.273][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.274][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:51.276][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.277][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.278][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.279][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.280][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-22 16:06:51.282][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:51.283][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.284][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-22 16:06:51.285][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:51.286][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.288][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.289][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:06:51.289][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:06:51.289][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:06:51.289][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-22 16:06:51.289][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-22 16:06:51.290][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:06:51.291][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.292][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:51.295][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.296][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.297][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.298][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.299][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:51.300][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:51.301][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.303][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.304][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-22 16:06:51.306][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.307][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-22 16:06:51.308][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.318][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:51.319][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.321][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.323][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.324][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.325][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-22 16:06:51.326][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:51.328][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.329][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-22 16:06:51.330][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:51.331][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.333][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.334][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.335][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:06:51.336][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.337][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.339][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:51.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.342][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.343][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.345][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:51.346][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:51.347][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.348][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.350][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-22 16:06:51.352][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.353][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-22 16:06:51.354][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.355][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:51.357][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.358][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.359][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.360][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.361][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-22 16:06:51.363][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:51.364][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.365][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-22 16:06:51.367][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:51.368][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.369][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.370][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.372][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-22 16:06:51.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.375][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:51.376][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.378][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.380][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.381][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:51.382][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:51.383][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.384][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.386][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:06:51.387][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.482][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-22 16:06:51.484][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-22 16:06:51.486][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-22 16:06:51.487][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-22 16:06:51.489][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-22 16:06:51.490][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-22 16:06:51.492][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-22 16:06:51.494][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-22 16:06:51.495][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-22 16:06:51.497][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-22 16:06:51.498][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-22 16:06:51.500][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-22 16:06:51.501][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-22 16:06:51.503][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-22 16:06:51.504][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-22 16:06:51.506][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-22 16:06:51.508][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-22 16:06:51.509][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-22 16:06:51.511][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-22 16:06:51.512][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-22 16:06:51.514][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-22 16:06:51.515][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-22 16:06:51.517][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-22 16:06:51.519][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-22 16:06:51.520][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-22 16:06:51.522][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-22 16:06:51.523][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-22 16:06:51.525][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-22 16:06:51.526][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-22 16:06:51.528][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-22 16:06:51.530][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-22 16:06:51.531][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-22 16:06:51.533][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-22 16:06:51.534][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-22 16:06:51.536][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-22 16:06:51.537][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-22 16:06:51.539][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-22 16:06:51.541][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-22 16:06:51.542][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-22 16:06:51.544][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-22 16:06:51.545][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-22 16:06:51.547][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-22 16:06:51.548][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-22 16:06:51.550][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-22 16:06:51.552][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-22 16:06:51.553][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-22 16:06:51.555][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-22 16:06:51.556][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-22 16:06:51.558][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-22 16:06:51.559][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-22 16:06:51.561][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-22 16:06:51.562][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-22 16:06:51.564][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-22 16:06:51.566][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-22 16:06:51.567][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-22 16:06:51.569][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-22 16:06:51.570][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-22 16:06:51.572][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-22 16:06:51.573][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-22 16:06:51.575][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-22 16:06:51.577][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-22 16:06:51.578][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-22 16:06:51.580][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-22 16:06:51.581][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-22 16:06:51.583][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-22 16:06:51.584][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-22 16:06:51.586][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-22 16:06:51.587][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-22 16:06:51.589][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-22 16:06:51.591][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-22 16:06:51.592][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-22 16:06:51.594][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-22 16:06:51.595][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-22 16:06:51.597][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-22 16:06:51.598][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-22 16:06:51.600][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-22 16:06:51.601][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-22 16:06:51.603][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-22 16:06:51.605][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-22 16:06:51.606][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-22 16:06:51.608][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-22 16:06:51.609][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-22 16:06:51.611][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-22 16:06:51.612][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-22 16:06:51.615][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2025-02-22 16:06:51.616][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-22 16:06:51.617][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.619][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.681][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.706][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-22 16:06:51.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-22 16:06:51.761][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-22 16:06:51.764][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-22 16:06:51.766][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.767][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-22 16:06:51.768][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.769][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:51.770][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.772][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.773][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.774][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.775][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-22 16:06:51.776][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:51.778][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.779][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-22 16:06:51.780][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:51.781][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-22 16:06:51.781][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-22 16:06:51.782][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.784][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.785][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-22 16:06:51.786][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.787][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.788][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:51.789][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.791][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.792][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.793][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-22 16:06:51.793][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-22 16:06:51.794][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:51.795][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:51.796][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.797][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.799][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-22 16:06:51.801][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.802][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-22 16:06:51.803][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.805][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:51.806][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.807][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.808][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.809][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.810][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:06:51.812][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:51.813][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.814][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-22 16:06:51.815][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:51.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-22 16:06:51.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-22 16:06:51.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-22 16:06:51.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-22 16:06:51.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-22 16:06:51.816][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-22 16:06:51.818][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.819][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:06:51.820][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-22 16:06:51.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.823][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:51.825][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.826][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.827][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.828][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:51.828][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:06:51.829][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:51.830][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:51.831][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.833][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.834][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-22 16:06:51.836][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.837][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-22 16:06:51.838][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.840][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:51.841][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.842][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.843][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.844][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.846][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:06:51.847][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:51.848][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.849][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-22 16:06:51.850][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-22 16:06:51.853][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.854][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-22 16:06:51.854][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-22 16:06:51.854][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-22 16:06:51.855][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-22 16:06:51.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.858][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.859][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:51.860][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.862][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.863][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:51.863][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:06:51.863][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-22 16:06:51.865][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:51.866][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:51.867][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.868][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:06:51.870][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-22 16:06:51.872][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.873][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-22 16:06:51.874][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.875][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-22 16:06:51.876][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.878][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.879][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.880][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.881][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-22 16:06:51.882][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-22 16:06:51.884][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.885][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-22 16:06:51.886][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-22 16:06:51.887][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-22 16:06:51.887][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-22 16:06:51.888][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-22 16:06:51.889][self$setPropertyValue]
biodb.DEBUG[2025-02-22 16:06:51.891][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-22 16:06:51.892][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.893][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.894][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-22 16:06:51.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-22 16:06:51.896][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-22 16:06:51.897][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-22 16:06:51.899][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-22 16:06:51.899][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-22 16:06:51.899][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-22 16:06:51.900][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-22 16:06:51.901][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-22 16:06:51.902][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-22 16:06:51.903][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:06:51.905][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-22 16:06:51.906][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-22 16:06:51.908][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-22 16:06:51.910][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-22 16:06:51.911][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-22 16:06:51.913][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-22 16:06:51.918][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-22 16:06:51.919][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2025-02-22 16:06:51.921][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-22 16:06:51.923][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-02-22 16:06:51.924][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-22 16:06:51.925][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-22 16:06:51.927][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-02-22 16:06:51.928][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-22 16:06:51.930][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-22 16:06:51.931][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-22 16:06:51.936][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2025-02-22 16:06:51.942][biodb::testThat]
biodb.INFO [2025-02-22 16:06:51.943][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-22 16:06:51.944][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:51.946][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:51.949][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2025-02-22 16:06:51.951][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:06:51.954][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-02-22 16:06:51.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:51.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:51.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:51.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:51.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:51.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:51.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:51.971][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:51.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:51.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.975][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:51.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.985][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:51.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:51.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:52.039][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2025-02-22 16:06:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.047][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:52.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:52.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:52.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.071][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:52.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:52.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.174][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.241][ef$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:52.253][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.254][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-22 16:06:52.255][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:52.256][biodb::testThat]
biodb.DEBUG[2025-02-22 16:06:52.259][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2025-02-22 16:06:52.261][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-22 16:06:52.264][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2025-02-22 16:06:52.266][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-22 16:06:52.281][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2025-02-22 16:06:52.283][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2025-02-22 16:06:52.285][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-02-22 16:06:52.286][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-02-22 16:06:52.288][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-22 16:06:52.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:52.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:52.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:52.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:52.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:52.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-22 16:06:52.303][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-22 16:06:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-22 16:06:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-22 16:06:52.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-22 16:06:52.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-22 16:06:52.371][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2025-02-22 16:06:52.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-22 16:06:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-22 16:06:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.378][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:06:52.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-22 16:06:52.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:06:52.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-22 16:06:52.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:52.398][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.399][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-22 16:06:52.400][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:52.401][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.410][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.411][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-22 16:06:52.412][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:52.413][biodb::testThat]
biodb.WARN [2025-02-22 16:06:52.417][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-02-22 16:06:52.421][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-02-22 16:06:52.432][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.433][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-22 16:06:52.434][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:52.435][biodb::testThat]
biodb.TRACE[2025-02-22 16:06:52.447][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.452][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:52.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:52.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.462][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:52.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:52.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:52.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:52.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.487][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-22 16:06:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-22 16:06:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.502][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-22 16:06:52.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.516][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:52.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-22 16:06:52.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-22 16:06:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:52.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-22 16:06:52.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-22 16:06:52.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-22 16:06:52.534][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.535][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-22 16:06:52.536][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:52.537][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.548][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.549][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-22 16:06:52.550][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:52.551][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.562][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.563][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-22 16:06:52.564][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:52.565][biodb::testThat]
biodb.DEBUG[2025-02-22 16:06:52.570][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2025-02-22 16:06:52.640][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2025-02-22 16:06:52.728][biodb::testThat]
biodb.INFO [2025-02-22 16:06:52.729][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-22 16:06:52.730][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-22 16:06:52.732][biodb::testThat]
biodb.DEBUG[2025-02-22 16:06:52.822][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2025-02-22 16:06:52.897][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-22 16:06:52.898][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2025-02-22 16:06:52.900][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2025-02-22 16:06:52.901][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-22 16:06:52.902][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-22 16:06:52.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-22 16:06:52.904][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-22 16:06:52.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-22 16:06:52.906][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-22 16:06:52.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1035 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1035 ]
> 
> proc.time()
   user  system elapsed 
  55.96    3.07   85.73

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R version 4.4.2 (2024-10-31 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package 'biodbNcbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)