Back to Long Tests report for BioC 3.20

This page was generated on 2024-11-09 23:55 -0500 (Sat, 09 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.1 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4765
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4506
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4538
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/32HostnameOS / ArchCHECK
biodbNcbi 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-11-09 09:55 -0500 (Sat, 09 Nov 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_20
git_last_commit: b6b4ed9
git_last_commit_date: 2024-10-29 11:09:30 -0500 (Tue, 29 Oct 2024)
nebbiolo2Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino8Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on palomino8

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.10.0
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
StartedAt: 2024-11-09 16:04:15 -0500 (Sat, 09 Nov 2024)
EndedAt: 2024-11-09 16:06:42 -0500 (Sat, 09 Nov 2024)
EllapsedTime: 147.8 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-11-09 16:05:01.023][biodb::testContext]
biodb.INFO [2024-11-09 16:05:01.026][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-09 16:05:01.027][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-11-09 16:05:01.028][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-09 16:05:01.029][biodb::testContext]
biodb.INFO [2024-11-09 16:05:01.036][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-09 16:05:01.038][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-09 16:05:01.045][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:01.047][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-09 16:05:01.048][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-09 16:05:01.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.052][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-09 16:05:01.068][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-09 16:05:01.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.072][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-09 16:05:01.073][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-09 16:05:01.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.078][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-09 16:05:01.079][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-09 16:05:01.080][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-09 16:05:01.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.084][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-09 16:05:01.086][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-09 16:05:01.087][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-09 16:05:01.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.091][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-09 16:05:01.092][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-09 16:05:01.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.097][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-09 16:05:01.098][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-09 16:05:01.099][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-09 16:05:01.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.103][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-09 16:05:01.104][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-09 16:05:01.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.109][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-09 16:05:01.110][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-09 16:05:01.111][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-09 16:05:01.112][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.115][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-09 16:05:01.117][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-09 16:05:01.118][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-09 16:05:01.119][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-09 16:05:01.120][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-09 16:05:01.121][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-09 16:05:01.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.126][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-09 16:05:01.127][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-09 16:05:01.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.131][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-09 16:05:01.132][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-09 16:05:01.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.137][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-09 16:05:01.138][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-09 16:05:01.139][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.142][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-09 16:05:01.143][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-09 16:05:01.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.148][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-09 16:05:01.149][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-09 16:05:01.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.153][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-09 16:05:01.154][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-09 16:05:01.158][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-09 16:05:01.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.162][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-09 16:05:01.164][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-09 16:05:01.165][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-09 16:05:01.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.171][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-09 16:05:01.206][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.220][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-09 16:05:01.221][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.223][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:01.224][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.225][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.226][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.228][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.229][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-09 16:05:01.230][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:01.231][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.232][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-09 16:05:01.233][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:01.235][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.236][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.237][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:01.237][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:01.237][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:01.237][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-09 16:05:01.237][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-09 16:05:01.238][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:01.239][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.240][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.242][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:01.243][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.244][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.245][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.246][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.247][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:01.248][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:01.249][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.250][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.252][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-09 16:05:01.254][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.255][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-09 16:05:01.256][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:01.259][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.260][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.261][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.262][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.263][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-09 16:05:01.264][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:01.266][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.267][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-09 16:05:01.268][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:01.269][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.270][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.271][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:01.271][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:01.271][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:01.271][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-09 16:05:01.271][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-09 16:05:01.273][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:01.274][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.275][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.276][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:01.277][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.280][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.281][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.282][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:01.283][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:01.284][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.285][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.287][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-09 16:05:01.289][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.290][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-09 16:05:01.291][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.292][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:01.294][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.295][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.296][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.297][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.298][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-09 16:05:01.299][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:01.301][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.302][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-09 16:05:01.303][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:01.304][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.305][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.307][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.308][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:01.309][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.310][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.311][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:01.312][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.314][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.315][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.316][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.317][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:01.318][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:01.319][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.320][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.322][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-09 16:05:01.324][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.325][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-09 16:05:01.326][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.327][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:01.329][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.330][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.331][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.332][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.333][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-09 16:05:01.334][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:01.336][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.337][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-09 16:05:01.338][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:01.339][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.340][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.342][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.343][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:01.344][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.345][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.346][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:01.347][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.348][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.350][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.351][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.352][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:01.353][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:01.354][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.355][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.359][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:01.360][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.415][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.458][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-09 16:05:01.462][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-09 16:05:01.464][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-09 16:05:01.465][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-09 16:05:01.467][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-09 16:05:01.468][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-09 16:05:01.470][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-09 16:05:01.471][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-09 16:05:01.473][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-09 16:05:01.475][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-09 16:05:01.476][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-09 16:05:01.478][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-09 16:05:01.479][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-09 16:05:01.481][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-09 16:05:01.482][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-09 16:05:01.484][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-09 16:05:01.485][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-09 16:05:01.487][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-09 16:05:01.488][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-09 16:05:01.490][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-09 16:05:01.491][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-09 16:05:01.493][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-09 16:05:01.495][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-09 16:05:01.496][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-09 16:05:01.498][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-09 16:05:01.499][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-09 16:05:01.501][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-09 16:05:01.502][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-09 16:05:01.504][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-09 16:05:01.505][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-09 16:05:01.507][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-09 16:05:01.508][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-09 16:05:01.510][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-09 16:05:01.511][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-09 16:05:01.513][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-09 16:05:01.514][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-09 16:05:01.516][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-09 16:05:01.517][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-09 16:05:01.519][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-09 16:05:01.520][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-09 16:05:01.522][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-09 16:05:01.523][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-09 16:05:01.525][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-09 16:05:01.527][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-09 16:05:01.528][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-09 16:05:01.530][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-09 16:05:01.531][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-09 16:05:01.533][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-09 16:05:01.534][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-09 16:05:01.536][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-09 16:05:01.537][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-09 16:05:01.539][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-09 16:05:01.541][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-09 16:05:01.542][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-09 16:05:01.544][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-09 16:05:01.546][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-09 16:05:01.547][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-09 16:05:01.549][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-09 16:05:01.550][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-09 16:05:01.552][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-09 16:05:01.553][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-09 16:05:01.555][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-09 16:05:01.556][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-09 16:05:01.558][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-09 16:05:01.560][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-09 16:05:01.561][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-09 16:05:01.563][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-09 16:05:01.564][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-09 16:05:01.566][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-09 16:05:01.567][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-09 16:05:01.569][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-09 16:05:01.570][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-09 16:05:01.572][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-09 16:05:01.573][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-09 16:05:01.575][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-09 16:05:01.577][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-09 16:05:01.578][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-09 16:05:01.580][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-09 16:05:01.581][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-09 16:05:01.583][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-09 16:05:01.584][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-09 16:05:01.586][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-09 16:05:01.588][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-09 16:05:01.628][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-09 16:05:01.631][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-09 16:05:01.634][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:01.635][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.637][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.752][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.764][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:01.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:01.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:01.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:01.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:01.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:01.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:01.777][bdb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-11-09 16:05:01.786][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-11-09 16:05:01.788][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.789][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-11-09 16:05:01.790][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.792][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:01.793][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.794][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.795][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.796][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.797][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-11-09 16:05:01.799][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:01.800][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.801][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-11-09 16:05:01.802][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:01.803][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-11-09 16:05:01.803][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-11-09 16:05:01.805][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.806][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.807][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-09 16:05:01.808][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.809][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.810][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:01.811][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.812][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.814][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.815][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:01.815][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-11-09 16:05:01.816][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:01.817][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:01.818][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.819][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.821][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-11-09 16:05:01.823][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.824][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-11-09 16:05:01.825][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.826][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:01.827][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.855][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.857][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.858][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.859][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:01.861][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:01.862][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.863][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-11-09 16:05:01.864][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:01.865][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-11-09 16:05:01.865][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-11-09 16:05:01.865][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-11-09 16:05:01.865][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-11-09 16:05:01.865][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-11-09 16:05:01.865][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-11-09 16:05:01.867][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.868][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:01.869][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-09 16:05:01.870][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.871][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.872][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:01.873][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.874][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.876][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.877][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:01.877][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:01.878][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:01.879][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:01.880][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.881][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.883][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-09 16:05:01.885][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.886][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-11-09 16:05:01.887][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.888][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:01.890][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.891][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.892][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.893][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.894][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:01.895][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:01.897][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.898][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-11-09 16:05:01.899][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.900][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:01.902][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.903][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:01.903][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:01.903][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:01.904][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-09 16:05:01.905][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.906][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.907][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:01.908][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.909][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.911][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.912][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:01.912][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:01.912][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-09 16:05:01.913][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:01.914][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:01.915][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.916][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:05:01.918][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-09 16:05:01.920][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.921][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-11-09 16:05:01.922][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.923][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:01.924][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.926][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.927][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.928][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.929][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:01.930][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:01.932][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.933][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-11-09 16:05:01.934][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:01.935][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-11-09 16:05:01.935][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-09 16:05:01.936][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:01.937][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:01.939][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-09 16:05:01.940][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.941][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.942][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:01.943][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:01.944][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:01.945][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:01.946][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:01.946][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:01.946][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-09 16:05:01.948][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:01.949][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:01.950][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:01.951][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:05:01.957][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-11-09 16:05:01.958][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-09 16:05:01.960][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-09 16:05:01.962][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-11-09 16:05:01.963][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-09 16:05:01.965][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-11-09 16:05:01.985][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-11-09 16:05:01.987][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-11-09 16:05:01.990][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-11-09 16:05:01.994][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-11-09 16:05:01.997][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:01.999][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:02.001][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-11-09 16:05:02.002][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:02.003][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:02.004][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-11-09 16:05:02.014][biodb::testThat]
biodb.INFO [2024-11-09 16:05:02.016][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-09 16:05:02.017][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:02.018][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:02.024][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-11-09 16:05:02.026][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:02.029][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:02.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:02.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:02.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:02.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:02.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:02.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:02.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.099][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.110][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.135][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:02.221][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-11-09 16:05:02.224][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.229][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:02.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.258][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:02.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:02.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:02.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:02.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.268][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:02.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:02.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.397][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.416][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.421][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.426][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.431][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.432][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.435][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.450][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.451][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.460][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.461][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.464][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.482][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-11-09 16:05:02.511][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:02.513][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:02.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:02.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:02.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:02.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:02.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:02.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:02.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:02.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.562][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.564][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.566][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.568][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:02.620][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-11-09 16:05:02.639][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.644][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:02.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:02.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.658][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:02.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:02.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.663][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:02.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:02.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.772][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.792][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.797][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.802][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.806][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.807][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.810][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.811][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:02.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.825][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.827][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:02.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.829][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:02.836][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:02.837][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:02.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:02.839][ef$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:02.851][biodb::testThat]
biodb.INFO [2024-11-09 16:05:02.852][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-09 16:05:02.853][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:02.854][biodb::testThat]
biodb.DEBUG[2024-11-09 16:05:02.857][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-11-09 16:05:02.869][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-09 16:05:02.875][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2024-11-09 16:05:02.877][self$getFolderPath] Create cache folder "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2024-11-09 16:05:02.879][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-11-09 16:05:02.880][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:05:02.881][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:02.882][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:02.884][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:02.885][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-09 16:05:02.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:02.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:02.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:02.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:02.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:02.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:02.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:02.905][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-11-09 16:05:02.923][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:02.924][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:02.925][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2024-11-09 16:05:04.515][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2024-11-09 16:05:05.879][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:05.881][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2024-11-09 16:05:05.896][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2024-11-09 16:05:05.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:05.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:05.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:05.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:05.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:05.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:05.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:05.930][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2024-11-09 16:05:05.952][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:05.953][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:05.967][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2024-11-09 16:05:07.700][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2024-11-09 16:05:09.011][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:09.014][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2024-11-09 16:05:09.019][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2024-11-09 16:05:09.022][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2024-11-09 16:05:09.027][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:09.028][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-11-09 16:05:09.030][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:09.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:09.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:09.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:09.040][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:09.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:09.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:09.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:09.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.067][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:09.068][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.070][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.072][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:09.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:09.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:09.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:09.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:09.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:09.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:09.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:09.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:09.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.147][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:09.148][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.151][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.152][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:09.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:09.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:09.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:09.221][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-11-09 16:05:09.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:09.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:09.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:09.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:09.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:09.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:09.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:09.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:09.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:09.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:09.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:09.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:09.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:09.274][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.275][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-09 16:05:09.276][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:09.277][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.286][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.287][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-09 16:05:09.288][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:09.290][biodb::testThat]
biodb.WARN [2024-11-09 16:05:09.307][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-11-09 16:05:09.325][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-11-09 16:05:09.337][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.339][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-09 16:05:09.340][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:09.341][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:09.366][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.371][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.381][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:09.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:09.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.386][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:09.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:09.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.390][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:09.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:09.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.395][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:09.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:09.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.409][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.414][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:09.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:09.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:09.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:09.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:09.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.429][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:09.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:09.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:09.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:09.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:09.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:09.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:09.446][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.447][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-09 16:05:09.449][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:09.450][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.462][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.463][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-09 16:05:09.464][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:09.465][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.476][biodb::testThat]
biodb.INFO [2024-11-09 16:05:09.477][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-09 16:05:09.478][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:09.479][biodb::testThat]
biodb.DEBUG[2024-11-09 16:05:09.484][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-11-09 16:05:10.837][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-11-09 16:05:12.400][biodb::testThat]
biodb.INFO [2024-11-09 16:05:12.401][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-09 16:05:12.402][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:12.404][biodb::testThat]
biodb.INFO [2024-11-09 16:05:12.413][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-09 16:05:12.421][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-11-09 16:05:12.422][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-11-09 16:05:12.423][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-09 16:05:12.424][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:12.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:12.427][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.429][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-09 16:05:12.449][biodb::testContext]
biodb.INFO [2024-11-09 16:05:12.450][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-09 16:05:12.452][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-11-09 16:05:12.453][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-09 16:05:12.454][biodb::testContext]
biodb.INFO [2024-11-09 16:05:12.473][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-09 16:05:12.476][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-09 16:05:12.499][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:12.500][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-09 16:05:12.502][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-09 16:05:12.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.506][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-09 16:05:12.508][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-09 16:05:12.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.512][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-09 16:05:12.513][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-09 16:05:12.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.518][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-09 16:05:12.519][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-09 16:05:12.520][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-09 16:05:12.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.525][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-09 16:05:12.526][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-09 16:05:12.527][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-09 16:05:12.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.532][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-09 16:05:12.533][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-09 16:05:12.534][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.537][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-09 16:05:12.538][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-09 16:05:12.540][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-09 16:05:12.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.544][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-09 16:05:12.545][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-09 16:05:12.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.550][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-09 16:05:12.551][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-09 16:05:12.552][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-09 16:05:12.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.557][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-09 16:05:12.558][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-09 16:05:12.559][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-09 16:05:12.560][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-09 16:05:12.561][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-09 16:05:12.563][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-09 16:05:12.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.567][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-09 16:05:12.568][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-09 16:05:12.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.573][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-09 16:05:12.574][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-09 16:05:12.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.579][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-09 16:05:12.580][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-09 16:05:12.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.584][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-09 16:05:12.585][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-09 16:05:12.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.595][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-09 16:05:12.596][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-09 16:05:12.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.601][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-09 16:05:12.602][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-09 16:05:12.605][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-09 16:05:12.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.610][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-09 16:05:12.611][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-09 16:05:12.612][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-09 16:05:12.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.619][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-09 16:05:12.621][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.622][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-09 16:05:12.623][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.625][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:12.626][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.627][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.628][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.630][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.631][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-09 16:05:12.632][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:12.633][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.634][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-09 16:05:12.636][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:12.637][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.638][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.639][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:12.639][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:12.639][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:12.639][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-09 16:05:12.639][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-09 16:05:12.640][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:12.642][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:12.643][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:12.644][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:12.645][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:12.646][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:12.647][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.649][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.650][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:12.651][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:12.652][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.653][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.655][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-09 16:05:12.657][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.658][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-09 16:05:12.659][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.660][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:12.661][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.663][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.664][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.665][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.666][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-09 16:05:12.667][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:12.669][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.670][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-09 16:05:12.671][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:12.672][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.673][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.675][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:12.675][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:12.675][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:12.675][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-09 16:05:12.675][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-09 16:05:12.676][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:12.677][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:12.678][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:12.679][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:12.681][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:12.682][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:12.683][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.684][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.685][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:12.686][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:12.687][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.689][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.690][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-09 16:05:12.692][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.693][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-09 16:05:12.695][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.696][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:12.697][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.698][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.699][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.701][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.702][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-09 16:05:12.703][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:12.704][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.705][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-09 16:05:12.707][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:12.708][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.709][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.710][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.711][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:12.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:12.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:12.715][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:12.716][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:12.717][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:12.718][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.720][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.726][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:12.727][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:12.728][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.729][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.731][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-09 16:05:12.733][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.734][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-09 16:05:12.735][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.737][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:12.738][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.739][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.740][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.743][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-09 16:05:12.744][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:12.745][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.746][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-09 16:05:12.747][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:12.749][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.750][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:12.751][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.752][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:12.754][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:12.755][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:12.756][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:12.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:12.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:12.759][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:12.760][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.762][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:12.763][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:12.764][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:12.765][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:12.767][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:12.768][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.791][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.792][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.819][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:12.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:12.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:12.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:12.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:12.868][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-09 16:05:12.869][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-09 16:05:12.871][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-09 16:05:12.872][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-09 16:05:12.874][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-09 16:05:12.876][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-09 16:05:12.877][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-09 16:05:12.879][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-09 16:05:12.880][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-09 16:05:12.882][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-09 16:05:12.884][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-09 16:05:12.885][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-09 16:05:12.887][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-09 16:05:12.888][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-09 16:05:12.890][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-09 16:05:12.891][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-09 16:05:12.893][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-09 16:05:12.895][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-09 16:05:12.896][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-09 16:05:12.898][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-09 16:05:12.899][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-09 16:05:12.901][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-09 16:05:12.902][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-09 16:05:12.904][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-09 16:05:12.906][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-09 16:05:12.907][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-09 16:05:12.909][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-09 16:05:12.910][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-09 16:05:12.912][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-09 16:05:12.913][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-09 16:05:12.915][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-09 16:05:12.917][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-09 16:05:12.918][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-09 16:05:12.920][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-09 16:05:12.921][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-09 16:05:12.923][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-09 16:05:12.925][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-09 16:05:12.926][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-09 16:05:12.928][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-09 16:05:12.929][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-09 16:05:12.931][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-09 16:05:12.932][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-09 16:05:12.934][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-09 16:05:12.936][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-09 16:05:12.937][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-09 16:05:12.939][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-09 16:05:12.940][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-09 16:05:12.942][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-09 16:05:12.944][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-09 16:05:12.945][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-09 16:05:12.947][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-09 16:05:12.948][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-09 16:05:12.950][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-09 16:05:12.952][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-09 16:05:12.953][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-09 16:05:12.955][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-09 16:05:12.956][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-09 16:05:12.958][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-09 16:05:12.959][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-09 16:05:12.961][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-09 16:05:12.963][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-09 16:05:12.969][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-09 16:05:12.971][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-09 16:05:12.973][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-09 16:05:12.974][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-09 16:05:12.976][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-09 16:05:12.977][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-09 16:05:12.979][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-09 16:05:12.980][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-09 16:05:12.982][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-09 16:05:12.984][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-09 16:05:12.985][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-09 16:05:12.987][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-09 16:05:12.988][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-09 16:05:12.990][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-09 16:05:12.992][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-09 16:05:12.993][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-09 16:05:12.995][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-09 16:05:12.997][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-09 16:05:12.998][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-09 16:05:13.000][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-09 16:05:13.001][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-09 16:05:13.003][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-09 16:05:13.005][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-09 16:05:13.007][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-09 16:05:13.008][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:13.009][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.012][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.024][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.115][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:13.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:13.163][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-11-09 16:05:13.176][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-11-09 16:05:13.178][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.180][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-11-09 16:05:13.181][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.182][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:13.183][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.185][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.186][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.187][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.188][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-11-09 16:05:13.189][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:13.191][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.192][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-11-09 16:05:13.193][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:13.194][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-11-09 16:05:13.194][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-11-09 16:05:13.195][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:13.197][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:13.198][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-09 16:05:13.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:13.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:13.201][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:13.202][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:13.204][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:13.205][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.206][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:13.206][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-11-09 16:05:13.207][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:13.208][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:13.209][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.211][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:13.212][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-11-09 16:05:13.214][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.215][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-11-09 16:05:13.217][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.218][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:13.219][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.220][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.221][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.223][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.224][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:13.225][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:13.226][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.227][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-11-09 16:05:13.229][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:13.230][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-11-09 16:05:13.230][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-11-09 16:05:13.230][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-11-09 16:05:13.230][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-11-09 16:05:13.230][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-11-09 16:05:13.230][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-11-09 16:05:13.231][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:13.232][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:13.233][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-09 16:05:13.235][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:13.236][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:13.242][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:13.243][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:13.245][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:13.246][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.247][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:13.247][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:13.248][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:13.249][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:13.250][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.252][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:13.253][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-09 16:05:13.255][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:13.256][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-11-09 16:05:13.258][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.259][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:13.260][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.261][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.262][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.264][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.265][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:13.266][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:13.267][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.268][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-11-09 16:05:13.270][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.271][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:13.272][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:13.274][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:13.274][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:13.274][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:13.275][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-09 16:05:13.276][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:13.277][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:13.278][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:13.279][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:13.280][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:13.282][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.283][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:13.283][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:13.283][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-09 16:05:13.284][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:13.285][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:13.286][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.288][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:05:13.289][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-09 16:05:13.291][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.292][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-11-09 16:05:13.294][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.295][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:13.296][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.297][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.298][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.300][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.301][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:13.302][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:13.303][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.304][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-11-09 16:05:13.306][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:13.307][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-11-09 16:05:13.307][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-09 16:05:13.308][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:13.309][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:13.310][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-09 16:05:13.312][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:13.313][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:13.314][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:13.315][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:13.316][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:13.317][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:13.319][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:13.319][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:13.319][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-09 16:05:13.320][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:13.321][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:13.322][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:13.323][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:05:13.325][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-11-09 16:05:13.326][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-09 16:05:13.328][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-09 16:05:13.330][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-11-09 16:05:13.331][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-09 16:05:13.333][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-11-09 16:05:13.340][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-11-09 16:05:13.342][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-11-09 16:05:13.343][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-11-09 16:05:13.345][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-11-09 16:05:13.346][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:13.347][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:13.349][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-11-09 16:05:13.351][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:13.352][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:13.433][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-11-09 16:05:13.439][biodb::testThat]
biodb.INFO [2024-11-09 16:05:13.441][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-09 16:05:13.442][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:13.443][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:13.875][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-11-09 16:05:13.877][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:13.881][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:13.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:13.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:13.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:13.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:13.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:13.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:13.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:13.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:13.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:13.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:13.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.926][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:13.927][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:13.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.930][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.932][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:13.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:13.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.937][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:13.938][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:13.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.943][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:13.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:13.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.948][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:13.949][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:13.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.958][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:13.959][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:13.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.962][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.964][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.969][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:13.970][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:13.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.972][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.976][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:13.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:13.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:13.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:13.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:13.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:13.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:13.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:13.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:13.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:14.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:14.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:14.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:14.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:14.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:14.075][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-11-09 16:05:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:14.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.083][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:14.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:14.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:14.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:14.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:14.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:14.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:14.102][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-09 16:05:14.128][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-11-09 16:05:14.130][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-11-09 16:05:14.131][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-11-09 16:05:14.146][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-09 16:05:14.148][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:14.149][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-09 16:05:14.166][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:14.168][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:14.169][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-09 16:05:14.171][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:14.172][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-11-09 16:05:14.173][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:14.174][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-11-09 16:05:14.186][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-11-09 16:05:14.187][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-11-09 16:05:14.189][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-09 16:05:14.193][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-11-09 16:05:14.195][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-09 16:05:14.196][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:05:14.197][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:14.199][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:14.200][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:14.201][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-09 16:05:14.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:14.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:14.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:14.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:14.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:14.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:14.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:14.218][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2024-11-09 16:05:14.221][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:14.222][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:14.224][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2024-11-09 16:05:15.551][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2024-11-09 16:05:18.093][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:18.096][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2024-11-09 16:05:18.101][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2024-11-09 16:05:18.105][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2024-11-09 16:05:18.108][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:18.110][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:18.111][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:18.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:18.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:18.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:18.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:18.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:18.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:18.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:18.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.153][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:18.154][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.156][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.158][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:18.211][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-11-09 16:05:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.217][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.227][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:18.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:18.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:18.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.236][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:18.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:18.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:18.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:18.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:18.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:18.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:18.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:18.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:18.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:18.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:18.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:18.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.489][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.494][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.495][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.513][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:18.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.518][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.522][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.527][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:18.528][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.531][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.532][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:18.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.547][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.553][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.558][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.563][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:18.565][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.568][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:18.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.585][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.601][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.603][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.607][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.640][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.642][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.644][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.662][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:18.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.668][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:18.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:18.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.673][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:18.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:18.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.678][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:18.680][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:18.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.684][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:18.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:18.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.701][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:18.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.706][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:18.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:18.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:18.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:18.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.717][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:18.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:18.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.722][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:18.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:18.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.740][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:18.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.746][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.756][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:18.758][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.760][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.762][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:18.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.778][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.780][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:18.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.782][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.790][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.791][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.794][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.801][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.805][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.812][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:18.814][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:18.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.816][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.824][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.825][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.828][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.835][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:18.837][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:18.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.846][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.848][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:18.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.850][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.858][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.859][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.891][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-11-09 16:05:18.893][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:18.894][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:18.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:18.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:18.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:18.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:18.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:18.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:18.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:18.924][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.929][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:18.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:18.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.942][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:18.943][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:18.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.947][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:18.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:18.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.952][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:18.953][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.958][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:18.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:18.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.963][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:18.964][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.966][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.968][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:18.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.973][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:18.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:18.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.979][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:18.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:18.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.984][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.985][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.991][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:18.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:18.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:19.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:19.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:19.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:19.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:19.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:19.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:19.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:19.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:19.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:19.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:19.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:19.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:19.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:19.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:19.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:19.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:19.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:19.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:19.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:19.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:19.051][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-11-09 16:05:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:19.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:19.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.058][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:19.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:19.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:19.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:19.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:19.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:19.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:19.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:19.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:19.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:19.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:19.077][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-09 16:05:19.078][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-11-09 16:05:19.117][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-09 16:05:19.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-11-09 16:05:19.132][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-09 16:05:19.134][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:05:19.135][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:19.136][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:19.137][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:19.139][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-09 16:05:19.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:19.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:19.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:19.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:19.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:19.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:19.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:19.165][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-11-09 16:05:19.168][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:19.169][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:19.171][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-11-09 16:05:20.562][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-11-09 16:05:21.911][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:21.915][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-11-09 16:05:21.920][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-11-09 16:05:21.924][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-11-09 16:05:21.927][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:21.929][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:21.930][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:21.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:21.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:21.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:21.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:21.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:21.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:21.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:21.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:21.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:21.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:21.964][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:21.965][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:21.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:21.967][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:21.969][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:21.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:21.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:21.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:21.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:21.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:21.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:21.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:21.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:21.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:21.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:21.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:21.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:21.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:21.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:21.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:21.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:21.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:21.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:21.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:21.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:21.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:21.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:21.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:21.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:21.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:22.023][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-11-09 16:05:22.031][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.036][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.041][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:22.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:22.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:22.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.056][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:22.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:22.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.061][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:22.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:22.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.469][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.473][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.503][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:22.504][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.523][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:22.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.528][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.532][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.537][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:22.538][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.541][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.542][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:22.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.556][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.561][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.566][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.571][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.572][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.575][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.605][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.606][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.608][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:22.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:22.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:22.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.640][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:22.641][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:22.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:22.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:22.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:22.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:22.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.674][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:22.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:22.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:22.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:22.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:22.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.703][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.708][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:22.709][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.727][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.729][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:22.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.731][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.738][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.739][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.741][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.748][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.751][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.758][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:22.759][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:22.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.768][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.770][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.772][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.779][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:22.780][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:22.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.782][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.789][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.790][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.800][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.801][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.840][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-11-09 16:05:22.842][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:22.844][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:22.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:22.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:22.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:22.855][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:22.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:22.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:22.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:22.880][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.898][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:22.899][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:22.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.901][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.904][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:22.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:22.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.909][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:22.910][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.916][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:22.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:22.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.920][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:22.922][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.927][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:22.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:22.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.932][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:22.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:22.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.935][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.938][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:22.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.943][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.944][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.952][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:22.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:22.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:22.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:22.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:22.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:22.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:23.012][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-11-09 16:05:23.014][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.019][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:23.039][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-09 16:05:23.040][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-11-09 16:05:23.041][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-09 16:05:23.043][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-11-09 16:05:23.045][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:23.047][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-11-09 16:05:23.049][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:23.050][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:23.052][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:23.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:23.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:23.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:23.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:23.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:23.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:23.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:23.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.083][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:23.084][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:23.141][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-11-09 16:05:23.143][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.152][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.162][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:23.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:23.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.300][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.319][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:23.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.333][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:23.334][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.338][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:23.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.352][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.357][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.362][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.367][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:23.368][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:23.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.392][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.401][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.406][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.407][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.409][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.411][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.439][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.440][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.458][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:23.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:23.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.463][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:23.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:23.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:23.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.472][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:23.473][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:23.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.477][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:23.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:23.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.491][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:23.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:23.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:23.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:23.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:23.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:23.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.505][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:23.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:23.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.509][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.510][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:23.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:23.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.525][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:23.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.530][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.534][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.539][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:23.540][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.542][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:23.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.558][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.559][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.562][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.568][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.570][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.572][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.578][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.588][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:23.590][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:23.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.599][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.600][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.609][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:23.611][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:23.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.620][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.622][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.631][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.632][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.664][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-11-09 16:05:23.666][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:23.668][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:23.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:23.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:23.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:23.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:23.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:23.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:23.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:23.698][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.702][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.709][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:23.711][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:23.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.713][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.716][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:23.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:23.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.720][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:23.722][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.724][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.727][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:23.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.731][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:23.733][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.735][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.737][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:23.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:23.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.742][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:23.744][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:23.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.746][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.748][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.753][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.754][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.757][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.761][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:23.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:23.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:23.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:23.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:23.820][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-11-09 16:05:23.823][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.828][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:23.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:23.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:23.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:23.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:23.847][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-09 16:05:23.848][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-11-09 16:05:23.849][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-09 16:05:23.851][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-11-09 16:05:23.853][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-09 16:05:23.854][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:05:23.855][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:23.857][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:23.858][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:23.859][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-09 16:05:23.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:23.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:23.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:23.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:23.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:23.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:23.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:23.876][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-11-09 16:05:23.879][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:23.881][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:23.882][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-11-09 16:05:27.096][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-11-09 16:05:28.587][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:28.589][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-11-09 16:05:28.595][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-11-09 16:05:28.598][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-11-09 16:05:28.601][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:28.603][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:28.604][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:28.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:28.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:28.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:28.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:28.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:28.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:28.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:28.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.650][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:28.652][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:28.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.655][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.658][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:28.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:28.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:28.710][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-11-09 16:05:28.711][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:28.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:28.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:28.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.721][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:28.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:28.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.726][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:28.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:28.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.731][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:28.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:28.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:28.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:28.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:28.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:28.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:28.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:28.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:28.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:28.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.844][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.845][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.848][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:28.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:28.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.863][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.868][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:28.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:28.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.873][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:28.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:28.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.878][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:28.879][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:28.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.882][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.897][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:28.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:28.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.902][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:28.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:28.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.906][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:28.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:28.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.911][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:28.912][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:28.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.915][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.916][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:28.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:28.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.931][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.935][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.940][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.945][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.946][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.949][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:28.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.978][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.980][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:28.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:28.998][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:29.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:29.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.003][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:29.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:29.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.008][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:29.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:29.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.013][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:29.014][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:29.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:29.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:29.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:29.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:29.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:29.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:29.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.047][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:29.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:29.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.050][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.052][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:29.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:29.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.088][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:29.090][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.093][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:29.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.108][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.109][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.111][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.118][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:29.120][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:29.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.139][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:29.140][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:29.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.149][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:29.150][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:29.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.159][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:29.160][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:29.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.169][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.171][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.180][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:29.181][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:29.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.183][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.230][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-11-09 16:05:29.231][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:29.233][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:29.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:29.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:29.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:29.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:29.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:29.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:29.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:29.281][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.294][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:29.295][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:29.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.297][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:29.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:29.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.306][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:29.308][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:29.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.314][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:29.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:29.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.319][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:29.320][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:29.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:29.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:29.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.331][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:29.333][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:29.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.339][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:29.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.344][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:29.345][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:29.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.356][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:29.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:29.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:29.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:29.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:29.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:29.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:29.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:29.419][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-11-09 16:05:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.426][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:29.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:29.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:29.445][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-09 16:05:29.446][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-11-09 16:05:29.448][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-09 16:05:29.450][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-11-09 16:05:29.451][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-09 16:05:29.453][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:05:29.454][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:29.455][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:29.456][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:29.457][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-09 16:05:29.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:29.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:29.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:29.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:29.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:29.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:29.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:29.475][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-11-09 16:05:29.478][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:29.479][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:29.480][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-11-09 16:05:30.796][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-11-09 16:05:32.065][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:32.068][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-11-09 16:05:32.074][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-11-09 16:05:32.078][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-11-09 16:05:32.081][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:32.083][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:32.084][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:32.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:32.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:32.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:32.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:32.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:32.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:32.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.123][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:32.125][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.127][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:32.182][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-11-09 16:05:32.183][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.188][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.193][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:32.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:32.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:32.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:32.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.215][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:32.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.220][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:32.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.323][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.348][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.352][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.357][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:32.358][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.361][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.377][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.391][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:32.392][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.395][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.410][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.415][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.420][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.424][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.426][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.458][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.459][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.461][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.477][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:32.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:32.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:32.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:32.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.491][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:32.492][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:32.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.496][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:32.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:32.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:32.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.524][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:32.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:32.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.529][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:32.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.543][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:32.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.548][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.557][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:32.558][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.561][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:32.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.576][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.577][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.586][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.587][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.589][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.596][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.600][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.606][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:32.607][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:32.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.616][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.617][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.620][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.627][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:32.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:32.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.637][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.638][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.647][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.649][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.689][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-11-09 16:05:32.691][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:32.693][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:32.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:32.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:32.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:32.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:32.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:32.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:32.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:32.722][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.723][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.733][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:32.734][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:32.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.736][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.743][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:32.744][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.746][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:32.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.753][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:32.754][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.763][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:32.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:32.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.767][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.769][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:32.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:32.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.773][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.775][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.777][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.780][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:32.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:32.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:32.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:32.838][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-11-09 16:05:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:32.864][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-09 16:05:32.865][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-11-09 16:05:32.866][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-09 16:05:32.868][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-11-09 16:05:32.870][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-09 16:05:32.871][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:05:32.873][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:32.874][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:32.875][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:32.876][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-09 16:05:32.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:32.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:32.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:32.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:32.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:32.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:32.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:32.893][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-11-09 16:05:32.896][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:32.897][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:32.899][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-11-09 16:05:34.185][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-11-09 16:05:35.499][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:35.502][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-11-09 16:05:35.509][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-11-09 16:05:35.512][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-11-09 16:05:35.516][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:35.518][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:35.519][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:35.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:35.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:35.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:35.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:35.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:35.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:35.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.561][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:35.562][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:35.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.566][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:35.621][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-11-09 16:05:35.622][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:35.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:35.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.630][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:35.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:35.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.637][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.643][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:35.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:35.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:35.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:35.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:35.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.777][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:35.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.801][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:35.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:35.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.815][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:35.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:35.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.821][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:35.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:35.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.826][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:35.828][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:35.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.830][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.831][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:35.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:35.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.853][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:35.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:35.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.858][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:35.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:35.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.869][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:35.870][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:35.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.874][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.890][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.905][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.907][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.910][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.911][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.943][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.944][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.946][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:35.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.964][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:35.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:35.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.969][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:35.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.974][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:35.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:35.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.979][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:35.980][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:35.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:35.984][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:35.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:35.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:35.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.001][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:36.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.012][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:36.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.017][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:36.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:36.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.022][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:36.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.037][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:36.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.043][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.047][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.053][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:36.054][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.056][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.058][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:36.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.074][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.076][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.085][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:36.087][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:36.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.089][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.096][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.107][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:36.109][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:36.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.113][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.120][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:36.121][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:36.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.124][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.131][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:36.133][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:36.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.135][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.142][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.143][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.155][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:36.156][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:36.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.159][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.188][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-11-09 16:05:36.190][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:36.191][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:36.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:36.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:36.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:36.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:36.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:36.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:36.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:36.217][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.231][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:36.232][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:36.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.235][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:36.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:36.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.242][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:36.243][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:36.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.253][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:36.254][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:36.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.259][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:36.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:36.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.264][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:36.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.267][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.269][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:36.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:36.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.274][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:36.276][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:36.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.278][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.281][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:36.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:36.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:36.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:36.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:36.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:36.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:36.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:36.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:36.347][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-11-09 16:05:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.354][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:36.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:36.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:36.373][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-11-09 16:05:36.375][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-11-09 16:05:36.376][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-09 16:05:36.378][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-11-09 16:05:36.379][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-11-09 16:05:36.381][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:05:36.382][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:36.383][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:36.384][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:36.386][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-11-09 16:05:36.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:36.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:36.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:36.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:36.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:36.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:36.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:36.403][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-11-09 16:05:36.406][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:36.407][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:36.409][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-11-09 16:05:38.464][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-11-09 16:05:40.989][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:40.992][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-11-09 16:05:40.997][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-11-09 16:05:41.001][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-11-09 16:05:41.004][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:41.006][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:41.007][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-11-09 16:05:41.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:41.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:41.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:41.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:41.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:41.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:41.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:41.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.042][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:41.043][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.045][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.047][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:41.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:41.100][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-11-09 16:05:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.111][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:41.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:41.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.121][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:41.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:41.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.125][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:41.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:41.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.235][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.255][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.260][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.265][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.270][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:41.271][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.304][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:41.305][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.328][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.338][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.339][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.372][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.373][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.405][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.414][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.416][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.418][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.419][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:41.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:41.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:41.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.448][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:41.449][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:41.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.452][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:41.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.467][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:41.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.477][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.482][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:41.483][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.485][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-11-09 16:05:41.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.501][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.502][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.505][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.512][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.513][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.515][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.522][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.533][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.534][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.543][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.544][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.553][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:41.554][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:41.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.557][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.563][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.565][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.573][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.575][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.577][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.594][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-11-09 16:05:41.595][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:41.597][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:41.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:41.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:41.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:41.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:41.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:41.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:41.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:41.615][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.616][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.624][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.626][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.628][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.629][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.634][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:41.636][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:41.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.639][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:41.640][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.644][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:41.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.649][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:41.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:41.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.654][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.655][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:41.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:41.707][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-11-09 16:05:41.709][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.714][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:41.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:41.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.724][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:41.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:41.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.729][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:41.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:41.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.733][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:41.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:41.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.738][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:41.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:41.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.841][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.846][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.867][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.872][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.876][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.881][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:41.882][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.886][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:41.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.905][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.914][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.915][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.918][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.933][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:41.934][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:41.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.943][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:41.945][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:41.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:41.953][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.955][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:41.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:41.957][ef$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:41.969][biodb::testThat]
biodb.INFO [2024-11-09 16:05:41.970][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-09 16:05:41.971][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:41.972][biodb::testThat]
biodb.DEBUG[2024-11-09 16:05:41.975][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-11-09 16:05:41.976][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-11-09 16:05:41.978][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-11-09 16:05:41.981][cch$loadFileContent] file.exist = [8]: "FALSE, FALSE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-11-09 16:05:42.145][loadFileContents] Loaded 6 files from cache: [6]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-11-09 16:05:42.147][conn$getEntryContent] 6 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:42.148][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:42.149][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:42.150][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:05:42.151][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-09 16:05:42.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002&retmode=xml".
biodb.DEBUG[2024-11-09 16:05:42.161][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:42.162][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:42.163][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002&retmode=xml".
biodb.TRACE[2024-11-09 16:05:42.254][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002&retmode=xml does not exist.
biodb.TRACE[2024-11-09 16:05:42.255][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:05:42.256][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:05:42.257][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002&retmode=xml).
biodb.TRACE[2024-11-09 16:05:42.970][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml"
biodb.DEBUG[2024-11-09 16:05:42.987][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:42.989][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-11-09 16:05:42.990][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-11-09 16:05:42.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:42.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:42.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:43.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:43.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:43.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:43.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:43.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.028][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.029][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.031][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.034][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.039][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.040][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.042][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.044][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.049][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.050][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.060][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.070][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.071][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.074][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.077][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:43.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:43.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:43.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:43.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:43.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:43.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:43.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:43.149][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.150][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.160][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.161][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.165][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.170][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.171][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.174][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.176][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.181][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.182][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.184][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.187][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.191][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.195][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.202][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.203][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.209][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:43.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:43.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:43.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:43.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:43.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:43.267][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:43.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:43.291][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.303][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.305][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.307][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.315][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.316][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.318][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.321][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.326][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.327][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.333][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.338][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.353][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.357][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.359][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.361][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.366][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:43.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:43.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:43.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:43.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:43.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:43.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:43.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:43.439][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.441][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.450][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.452][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.454][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.457][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.461][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.463][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.467][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.472][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.474][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.479][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.483][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.485][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.487][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.490][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.494][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.496][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:43.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:43.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:43.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:43.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:43.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:43.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:43.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:43.594][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.607][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.608][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.617][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.624][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.626][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.635][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.643][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.644][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.651][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.656][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.665][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.669][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.671][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.673][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.682][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:43.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:43.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:43.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:43.744][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:43.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:43.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:43.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:43.759][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.769][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.771][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.775][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.780][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.781][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.786][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.790][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.792][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.794][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.796][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.801][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.802][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.804][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.807][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.812][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.813][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.815][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.818][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:43.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:43.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:43.865][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:43.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:43.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:43.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:43.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:43.887][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.891][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.898][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.899][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.901][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.903][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:43.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.914][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.915][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.917][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.919][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:43.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:43.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.924][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.926][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.928][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.930][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:43.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:43.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.935][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.938][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.940][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:43.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.945][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.946][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.948][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.951][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:43.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:43.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:43.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:43.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:43.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:43.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:43.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:43.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:43.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:44.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:44.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:44.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:44.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:44.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.021][ef$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:44.022][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:44.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.024][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.025][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-11-09 16:05:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-11-09 16:05:44.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.030][ef$get] Asked field names are: location.
biodb.TRACE[2024-11-09 16:05:44.031][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-11-09 16:05:44.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.035][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:44.036][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:44.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.040][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-11-09 16:05:44.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-11-09 16:05:44.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.045][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-11-09 16:05:44.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:44.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.048][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.050][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:44.051][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-11-09 16:05:44.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:44.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:44.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-11-09 16:05:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:44.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:44.202][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-11-09 16:05:44.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:44.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:44.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:44.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:44.376][biodb::testThat]
biodb.INFO [2024-11-09 16:05:44.377][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-09 16:05:44.378][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:44.379][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:44.383][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:44.384][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:44.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.386][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:44.388][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-11-09 16:05:44.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:44.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:44.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:44.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:44.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:44.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:44.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:44.423][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-11-09 16:05:44.429][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-11-09 16:05:44.432][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:44.434][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:44.435][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2024-11-09 16:05:44.512][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2024-11-09 16:05:44.514][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:05:44.515][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:05:44.517][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2024-11-09 16:05:44.566][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:44.569][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2024-11-09 16:05:44.574][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2024-11-09 16:05:44.577][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-11-09 16:05:44.599][biodb::testThat]
biodb.INFO [2024-11-09 16:05:44.601][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-09 16:05:44.602][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:44.603][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:44.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:44.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:44.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:44.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:44.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:44.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:44.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:44.659][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-11-09 16:05:44.663][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:44.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-11-09 16:05:44.666][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:44.668][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-11-09 16:05:44.692][biodb::testThat]
biodb.INFO [2024-11-09 16:05:44.694][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-09 16:05:44.695][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:44.696][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:44.710][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.715][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:44.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:44.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:44.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:44.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:44.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:44.734][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-11-09 16:05:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.740][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:44.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.759][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:44.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:44.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.779][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.784][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:44.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:44.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:44.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:44.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:44.794][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:44.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:44.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:44.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:44.807][biodb::testThat]
biodb.INFO [2024-11-09 16:05:44.808][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-09 16:05:44.809][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:44.810][biodb::testThat]
biodb.INFO [2024-11-09 16:05:44.825][biodb::testThat]
biodb.INFO [2024-11-09 16:05:44.826][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-09 16:05:44.827][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:44.828][biodb::testThat]
biodb.INFO [2024-11-09 16:05:44.839][biodb::testThat]
biodb.INFO [2024-11-09 16:05:44.840][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-09 16:05:44.841][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:44.842][biodb::testThat]
biodb.DEBUG[2024-11-09 16:05:44.847][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-11-09 16:05:48.290][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-11-09 16:05:51.984][biodb::testThat]
biodb.INFO [2024-11-09 16:05:51.985][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-09 16:05:51.987][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:51.988][biodb::testThat]
biodb.INFO [2024-11-09 16:05:51.997][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-09 16:05:51.998][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-11-09 16:05:51.999][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-11-09 16:05:52.001][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-11-09 16:05:52.008][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-11-09 16:05:52.009][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-09 16:05:52.010][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.012][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.014][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-09 16:05:52.031][biodb::testContext]
biodb.INFO [2024-11-09 16:05:52.032][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-09 16:05:52.033][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-11-09 16:05:52.034][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-09 16:05:52.035][biodb::testContext]
biodb.INFO [2024-11-09 16:05:52.038][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-09 16:05:52.040][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-09 16:05:52.046][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:52.047][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-09 16:05:52.048][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-09 16:05:52.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.052][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-09 16:05:52.054][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-09 16:05:52.055][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.058][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-09 16:05:52.059][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-09 16:05:52.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.064][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-09 16:05:52.065][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-09 16:05:52.066][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-09 16:05:52.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.080][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-09 16:05:52.081][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-09 16:05:52.083][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-09 16:05:52.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.087][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-09 16:05:52.088][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-09 16:05:52.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.092][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-09 16:05:52.093][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-09 16:05:52.095][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-09 16:05:52.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.099][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-09 16:05:52.100][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-09 16:05:52.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.104][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-09 16:05:52.105][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-09 16:05:52.107][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-09 16:05:52.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.111][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-09 16:05:52.112][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-09 16:05:52.113][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-09 16:05:52.114][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-09 16:05:52.116][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-09 16:05:52.117][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-09 16:05:52.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.121][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-09 16:05:52.122][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-09 16:05:52.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.127][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-09 16:05:52.128][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-09 16:05:52.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.132][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-09 16:05:52.133][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-09 16:05:52.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.138][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-09 16:05:52.139][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-09 16:05:52.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.143][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-09 16:05:52.144][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-09 16:05:52.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.149][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-09 16:05:52.150][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-09 16:05:52.153][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-09 16:05:52.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.158][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-09 16:05:52.159][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-09 16:05:52.160][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-09 16:05:52.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.164][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-09 16:05:52.166][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.168][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-09 16:05:52.169][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.170][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:52.171][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.172][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.173][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.174][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.176][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-09 16:05:52.177][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:52.178][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.179][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-09 16:05:52.180][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:52.182][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.183][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.184][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:52.184][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:52.184][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:52.184][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-09 16:05:52.184][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-09 16:05:52.185][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:52.186][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.188][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.189][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:52.190][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.191][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.192][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.193][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.194][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:52.195][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:52.197][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.198][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.199][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-09 16:05:52.201][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.202][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-09 16:05:52.204][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:52.206][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.207][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.208][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.210][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.211][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-09 16:05:52.212][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:52.213][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.214][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-09 16:05:52.215][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:52.217][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.218][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.219][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:52.219][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:52.219][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:52.219][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-09 16:05:52.219][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-09 16:05:52.220][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:52.221][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.222][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.224][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:52.225][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.226][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.227][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.228][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.229][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:52.230][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:52.232][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.233][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.234][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-09 16:05:52.236][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.237][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-09 16:05:52.238][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.240][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:52.241][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.242][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.243][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.244][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.245][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-09 16:05:52.247][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:52.248][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.249][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-09 16:05:52.250][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:52.251][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.252][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.254][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.255][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:52.256][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.257][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.258][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:52.259][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.260][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.262][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.263][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.264][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:52.265][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:52.266][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.267][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.269][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-09 16:05:52.271][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.272][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-09 16:05:52.273][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.274][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:52.275][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.276][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.278][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.279][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.280][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-09 16:05:52.281][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:52.282][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.284][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-09 16:05:52.285][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:52.286][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.287][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.288][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.289][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:05:52.291][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.292][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:52.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.296][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.297][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.298][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:52.299][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:52.301][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.302][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.303][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:52.304][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.397][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-09 16:05:52.399][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-09 16:05:52.400][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-09 16:05:52.402][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-09 16:05:52.403][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-09 16:05:52.405][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-09 16:05:52.406][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-09 16:05:52.408][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-09 16:05:52.410][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-09 16:05:52.411][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-09 16:05:52.413][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-09 16:05:52.414][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-09 16:05:52.416][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-09 16:05:52.417][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-09 16:05:52.419][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-09 16:05:52.420][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-09 16:05:52.422][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-09 16:05:52.423][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-09 16:05:52.425][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-09 16:05:52.426][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-09 16:05:52.428][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-09 16:05:52.430][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-09 16:05:52.431][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-09 16:05:52.433][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-09 16:05:52.434][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-09 16:05:52.436][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-09 16:05:52.437][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-09 16:05:52.439][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-09 16:05:52.440][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-09 16:05:52.442][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-09 16:05:52.443][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-09 16:05:52.445][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-09 16:05:52.446][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-09 16:05:52.448][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-09 16:05:52.450][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-09 16:05:52.451][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-09 16:05:52.453][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-09 16:05:52.454][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-09 16:05:52.456][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-09 16:05:52.457][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-09 16:05:52.459][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-09 16:05:52.460][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-09 16:05:52.462][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-09 16:05:52.463][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-09 16:05:52.465][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-09 16:05:52.467][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-09 16:05:52.468][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-09 16:05:52.470][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-09 16:05:52.471][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-09 16:05:52.473][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-09 16:05:52.474][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-09 16:05:52.476][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-09 16:05:52.483][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-09 16:05:52.485][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-09 16:05:52.486][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-09 16:05:52.488][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-09 16:05:52.489][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-09 16:05:52.491][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-09 16:05:52.493][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-09 16:05:52.494][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-09 16:05:52.496][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-09 16:05:52.497][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-09 16:05:52.499][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-09 16:05:52.500][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-09 16:05:52.502][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-09 16:05:52.503][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-09 16:05:52.505][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-09 16:05:52.506][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-09 16:05:52.508][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-09 16:05:52.509][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-09 16:05:52.511][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-09 16:05:52.512][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-09 16:05:52.514][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-09 16:05:52.515][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-09 16:05:52.517][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-09 16:05:52.518][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-09 16:05:52.520][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-09 16:05:52.521][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-09 16:05:52.523][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-09 16:05:52.525][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-09 16:05:52.526][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-09 16:05:52.528][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-09 16:05:52.529][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-09 16:05:52.531][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-09 16:05:52.533][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-09 16:05:52.534][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:05:52.535][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.538][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.569][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.576][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.606][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:05:52.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:52.667][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-11-09 16:05:52.669][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-11-09 16:05:52.671][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.672][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-11-09 16:05:52.674][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.675][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:52.676][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.677][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.678][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.679][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.681][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-11-09 16:05:52.682][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:52.683][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.684][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-11-09 16:05:52.685][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:52.686][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-11-09 16:05:52.686][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-11-09 16:05:52.688][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.689][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.690][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-09 16:05:52.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.692][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.693][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:52.694][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.695][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.697][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.698][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:05:52.698][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-11-09 16:05:52.699][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:52.700][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:52.701][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.702][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.704][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-11-09 16:05:52.706][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.707][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-11-09 16:05:52.708][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.709][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:52.710][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.711][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.713][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.714][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.715][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:52.716][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:52.717][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.718][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-11-09 16:05:52.720][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:52.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-11-09 16:05:52.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-11-09 16:05:52.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-11-09 16:05:52.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-11-09 16:05:52.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-11-09 16:05:52.721][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-11-09 16:05:52.722][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.723][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:52.724][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-09 16:05:52.725][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.726][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.728][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:52.729][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.730][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.731][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.732][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:52.732][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:52.733][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:52.734][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:52.735][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.736][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.738][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-09 16:05:52.740][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.741][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-11-09 16:05:52.742][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.743][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:52.745][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.746][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.747][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.748][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.749][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:52.750][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:52.751][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.753][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-11-09 16:05:52.754][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.755][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:05:52.756][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.758][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:05:52.758][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:05:52.758][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:05:52.759][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-09 16:05:52.760][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.761][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.762][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:52.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.764][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.765][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.766][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:52.766][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:52.766][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-09 16:05:52.768][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:52.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:52.770][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.771][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:05:52.772][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-09 16:05:52.774][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.776][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-11-09 16:05:52.777][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.778][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:05:52.779][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.780][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.781][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.782][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.784][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:05:52.785][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:05:52.786][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.787][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-11-09 16:05:52.788][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:05:52.789][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-11-09 16:05:52.789][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-09 16:05:52.791][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:05:52.792][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:05:52.793][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-09 16:05:52.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.796][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:05:52.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:05:52.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:05:52.800][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:05:52.801][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:52.801][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:05:52.801][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-09 16:05:52.802][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:05:52.803][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:05:52.804][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:05:52.805][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:05:52.807][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-11-09 16:05:52.808][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-09 16:05:52.810][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-09 16:05:52.812][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-11-09 16:05:52.813][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-09 16:05:52.815][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-11-09 16:05:52.822][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-09 16:05:52.823][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-11-09 16:05:52.824][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-09 16:05:52.826][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-11-09 16:05:52.828][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-09 16:05:52.829][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-09 16:05:52.830][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-11-09 16:05:52.832][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-09 16:05:52.833][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-09 16:05:52.835][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:05:52.840][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-11-09 16:05:52.845][biodb::testThat]
biodb.INFO [2024-11-09 16:05:52.846][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-09 16:05:52.847][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:52.848][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:52.863][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-11-09 16:05:52.865][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:52.868][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:05:52.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:52.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:52.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:52.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:52.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:52.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:52.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:52.887][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:52.888][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:52.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.891][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:52.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.904][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:52.905][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:52.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.908][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.914][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:52.915][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:52.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.917][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.924][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:52.925][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:52.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.934][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:52.935][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:52.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.943][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:52.945][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:52.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:52.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.953][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:52.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:52.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.958][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:52.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.963][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:52.964][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:52.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.966][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.973][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:52.974][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:52.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:52.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:52.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:52.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:52.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.986][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.992][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:52.993][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:52.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:52.995][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:52.997][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:52.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:52.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.002][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:53.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.005][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:53.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.011][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.013][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.015][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.021][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.022][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.025][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.060][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.074][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:53.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:53.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:53.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:53.154][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-11-09 16:05:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:53.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:53.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:53.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:53.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:53.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.176][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.181][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.292][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.325][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:53.327][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.334][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.364][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:53.365][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:53.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.383][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:53.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:53.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:53.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:53.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.397][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:53.398][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:53.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:53.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:53.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.416][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:53.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.420][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:53.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:53.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.425][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:53.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:53.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.430][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:53.431][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:53.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.434][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.463][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.465][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.497][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.498][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.530][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.531][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.563][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.564][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.566][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.596][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.597][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.630][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.631][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.633][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.663][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.665][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.667][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:53.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:53.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:53.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:53.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.697][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:53.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:53.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.733][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.735][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:53.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:53.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:53.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:53.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:53.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:53.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.782][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:53.784][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:53.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:53.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:53.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.801][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.803][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.805][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.812][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.813][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.815][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.822][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.823][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:53.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.832][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.834][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:53.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.843][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.844][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:53.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.853][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.854][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:53.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.856][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:53.864][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:53.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.866][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:53.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:53.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.876][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:53.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.886][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.893][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:53.894][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:53.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.896][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.903][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.904][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:53.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.907][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.914][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:53.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.917][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.923][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:53.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:53.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.933][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.934][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:53.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.943][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.944][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:53.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.946][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.966][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-11-09 16:05:53.968][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:05:53.969][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:05:53.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:53.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:53.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:53.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:53.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:53.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:53.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:53.986][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.988][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.990][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:53.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:53.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:53.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:53.996][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.998][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:53.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.000][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.006][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.007][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.010][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.016][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.017][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.026][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.027][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.029][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.036][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.037][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.046][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:54.047][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.056][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:54.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:54.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.059][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:54.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:54.067][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:54.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.069][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:54.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:54.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.079][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.086][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:54.087][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:54.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.089][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.091][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:54.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:54.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.096][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:54.097][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.099][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.106][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.107][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.109][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.111][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.116][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.117][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:54.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.154][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:54.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.182][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:54.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:54.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:54.255][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-11-09 16:05:54.258][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:54.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.263][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:54.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:54.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:54.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:54.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.273][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:54.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:54.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:54.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:54.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.394][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.428][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.430][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:54.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.462][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.481][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:54.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:54.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:54.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:54.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.496][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:54.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:54.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.501][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:54.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:54.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.516][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:54.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:54.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.525][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.530][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:54.531][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:54.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.535][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.564][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.565][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:54.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.598][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.599][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.632][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.633][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:54.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.672][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:54.673][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:54.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.705][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.707][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.709][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.740][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.741][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.743][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.774][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.775][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.777][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.808][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.809][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.811][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.842][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.843][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:54.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:54.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:54.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.872][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:54.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:54.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:54.878][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:54.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.880][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:54.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:54.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.896][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:54.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:54.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.900][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.906][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.908][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:54.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.910][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.916][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.918][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:54.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.920][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.927][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.928][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:54.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.930][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.937][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.938][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:54.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.947][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.948][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:54.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.957][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:54.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:54.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:54.969][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:54.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:54.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.988][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:54.990][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:54.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:54.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:54.999][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:55.000][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:55.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.009][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:55.010][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:55.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.012][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.019][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.020][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.029][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.039][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.040][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.043][ef$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:55.054][biodb::testThat]
biodb.INFO [2024-11-09 16:05:55.055][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-09 16:05:55.057][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:55.058][biodb::testThat]
biodb.DEBUG[2024-11-09 16:05:55.060][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-11-09 16:05:55.062][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-09 16:05:55.066][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-11-09 16:05:55.069][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-11-09 16:05:55.095][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-11-09 16:05:55.097][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:55.098][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-09 16:05:55.100][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:05:55.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:55.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:55.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:55.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:55.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:55.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:55.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:55.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.128][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.129][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.131][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.138][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.139][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.141][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.154][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.156][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.164][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.166][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.174][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.175][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.184][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:55.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:55.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.189][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:55.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:55.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.194][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:55.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:55.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.197][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:55.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:55.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.203][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:55.205][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:55.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:55.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:55.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.213][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:55.215][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:55.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.217][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.223][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:55.224][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:55.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:55.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.233][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:55.234][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:55.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:55.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:55.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.242][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.244][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.252][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.253][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.257][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.276][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:55.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.291][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:55.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.305][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:55.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:55.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:55.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:55.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:55.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:55.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:55.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:55.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:55.387][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.388][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.397][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.398][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.400][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.407][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.408][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.417][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.418][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.420][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.427][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.428][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.430][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.436][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.438][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.440][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.446][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:55.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:55.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.450][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.451][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:55.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.456][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:55.457][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:55.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.460][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.461][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:55.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:55.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:55.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.469][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.476][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:55.477][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:55.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.479][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.486][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:55.487][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:55.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.491][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:55.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:55.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.496][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:55.497][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:55.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.499][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.506][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.507][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.509][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:55.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.515][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.517][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.519][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:55.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.540][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:55.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:55.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:55.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.574][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:55.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:55.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:55.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:55.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:55.670][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-11-09 16:05:55.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:55.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:55.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:55.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:55.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:05:55.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:55.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:05:55.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:55.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:05:55.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:55.717][biodb::testThat]
biodb.INFO [2024-11-09 16:05:55.719][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-09 16:05:55.720][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:55.721][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:55.724][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.728][ef$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:55.730][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-11-09 16:05:55.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:55.764][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-11-09 16:05:55.770][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-11-09 16:05:55.774][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:55.776][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-11-09 16:05:55.777][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:55.790][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-11-09 16:05:55.792][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-11-09 16:05:55.809][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:55.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:55.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.814][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:55.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:55.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.818][ef$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:55.824][biodb::testThat]
biodb.INFO [2024-11-09 16:05:55.825][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-09 16:05:55.826][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:55.827][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:55.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:55.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:55.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:55.884][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-11-09 16:05:55.888][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:55.889][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-11-09 16:05:55.891][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:55.893][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-11-09 16:05:55.917][biodb::testThat]
biodb.INFO [2024-11-09 16:05:55.918][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-09 16:05:55.919][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:55.920][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:55.933][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:55.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:55.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.938][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:55.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:55.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:55.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:55.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:55.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:55.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:55.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:55.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.962][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.968][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:55.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:05:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:05:55.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:05:55.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:55.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:55.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:05:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:05:55.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:05:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:55.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:55.997][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:55.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:05:55.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:56.010][biodb::testThat]
biodb.INFO [2024-11-09 16:05:56.012][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-09 16:05:56.013][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:56.014][biodb::testThat]
biodb.INFO [2024-11-09 16:05:56.032][biodb::testThat]
biodb.INFO [2024-11-09 16:05:56.033][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-09 16:05:56.034][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:56.036][biodb::testThat]
biodb.INFO [2024-11-09 16:05:56.047][biodb::testThat]
biodb.INFO [2024-11-09 16:05:56.048][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-09 16:05:56.049][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:56.050][biodb::testThat]
biodb.DEBUG[2024-11-09 16:05:56.054][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-11-09 16:05:56.180][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-11-09 16:05:56.310][biodb::testThat]
biodb.INFO [2024-11-09 16:05:56.311][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-09 16:05:56.312][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:56.313][biodb::testThat]
biodb.DEBUG[2024-11-09 16:05:56.408][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-11-09 16:05:56.488][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:56.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:56.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.492][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:56.493][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.497][ef$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:56.499][biodb::testThat]
biodb.INFO [2024-11-09 16:05:56.500][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-11-09 16:05:56.501][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:56.502][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:56.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:56.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:56.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:56.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:56.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:56.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:56.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:56.627][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-11-09 16:05:56.631][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:56.633][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-11-09 16:05:56.635][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:56.637][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-11-09 16:05:56.707][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-11-09 16:05:56.711][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:56.712][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-11-09 16:05:56.714][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:56.716][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-11-09 16:05:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:05:56.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:05:56.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:56.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:56.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:56.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:56.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:56.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:56.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:56.778][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:05:56.782][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:56.784][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-09 16:05:56.785][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:56.813][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-09 16:05:56.833][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-11-09 16:05:56.837][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:56.838][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-11-09 16:05:56.840][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:56.879][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-11-09 16:05:57.180][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-11-09 16:05:57.184][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:57.186][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-11-09 16:05:57.187][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:57.201][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-11-09 16:05:57.231][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-11-09 16:05:57.235][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:57.237][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-11-09 16:05:57.239][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:57.252][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-11-09 16:05:57.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:57.306][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:05:57.309][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:57.311][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-11-09 16:05:57.312][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:57.326][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-11-09 16:05:57.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-11-09 16:05:57.348][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:57.349][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-11-09 16:05:57.351][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:57.363][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-11-09 16:05:57.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-11-09 16:05:57.387][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:57.389][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-11-09 16:05:57.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:57.403][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-11-09 16:05:57.432][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-11-09 16:05:57.436][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:57.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-11-09 16:05:57.439][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:57.443][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-11-09 16:05:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:05:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:05:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:05:57.482][biodb::testThat]
biodb.INFO [2024-11-09 16:05:57.483][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-11-09 16:05:57.484][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:05:57.485][biodb::testThat]
biodb.TRACE[2024-11-09 16:05:57.489][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:05:57.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:05:57.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:05:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:05:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:57.540][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:57.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:57.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:57.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:57.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:57.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:57.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:57.569][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:05:57.572][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:05:57.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-09 16:05:57.575][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:05:57.577][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-09 16:05:57.580][private$loadEntries] Creating entries from ids [3]: "172394306, 172394297, 172393920".
biodb.DEBUG[2024-11-09 16:05:57.581][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-09 16:05:57.583][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172394306, 172394297, 172393920".
biodb.TRACE[2024-11-09 16:05:57.584][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-11-09 16:05:57.619][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172394306.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172394297.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172393920.xml".
biodb.DEBUG[2024-11-09 16:05:57.621][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:57.623][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-09 16:05:57.624][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:05:57.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:57.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:57.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:57.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:57.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:57.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:57.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:57.641][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:57.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:57.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.645][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:57.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.651][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.652][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.655][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.661][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.662][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.665][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.671][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.673][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.681][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.682][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.691][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.692][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.694][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.701][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:57.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.704][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.706][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:57.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.711][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:57.712][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:57.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.714][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.721][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:57.722][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:57.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.724][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:57.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:57.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.734][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:57.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:57.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.741][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:57.742][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:57.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:57.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.751][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:57.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.754][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.761][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:57.762][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:57.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.764][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.771][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:57.772][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:57.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:57.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:57.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:57.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.810][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:57.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.839][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:57.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:57.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:57.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:57.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:57.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:57.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:57.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:57.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:57.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:57.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:57.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:57.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:57.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:57.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:57.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:57.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:57.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:57.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:57.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:57.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:57.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:57.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:57.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.918][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.920][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:57.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.928][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.930][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.932][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:57.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.939][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.940][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:57.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.949][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.950][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.952][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:57.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.959][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.960][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.962][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:57.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.969][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:57.970][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.972][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.974][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:57.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.979][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:57.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:57.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:57.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:57.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:57.990][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:57.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:57.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:58.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:58.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.003][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.004][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:58.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:58.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.017][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:58.019][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:58.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.022][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:58.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:58.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.027][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:58.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:58.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.031][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.032][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.037][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:58.039][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:58.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.041][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:58.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:58.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.047][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:58.049][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:58.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:58.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:58.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.057][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.072][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:58.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.086][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:58.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.100][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:58.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:58.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:58.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:58.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:58.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:58.169][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:58.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:58.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:58.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:58.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:58.183][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.186][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.193][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.194][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.202][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.204][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.212][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.214][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.222][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.223][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.232][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.233][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.242][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:58.243][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:58.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.247][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:58.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:58.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.252][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:58.253][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:58.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.255][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.257][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:58.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:58.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:58.263][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:58.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:58.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:58.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:58.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:58.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:58.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:58.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.281][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:58.282][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:58.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:58.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.291][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:58.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:58.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.301][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:58.302][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:58.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:58.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:58.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.311][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:58.312][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:58.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.314][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.316][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:58.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:58.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:58.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.335][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:58.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:58.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.349][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:58.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:58.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:58.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.378][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:58.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:58.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:58.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:58.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:58.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:58.481][self$createEntryFromContent] Accession numbers: 172394306, 172394297, 172393920.
biodb.DEBUG[2024-11-09 16:05:58.482][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:05:58.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:58.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:58.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:58.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:58.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:58.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:58.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:58.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.507][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.509][private$selectFields]
biodb.TRACE[2024-11-09 16:05:58.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:05:58.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:05:58.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.513][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.514][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.521][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.524][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.529][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:05:58.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.553][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394306].
biodb.DEBUG[2024-11-09 16:05:58.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:58.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:58.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:58.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:58.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:58.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:58.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:58.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.579][private$selectFields]
biodb.TRACE[2024-11-09 16:05:58.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:05:58.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:05:58.582][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.588][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.593][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.594][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.597][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.600][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:05:58.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-09 16:05:58.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:58.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:58.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:58.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:58.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:58.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:58.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:58.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.641][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.642][private$selectFields]
biodb.TRACE[2024-11-09 16:05:58.643][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:05:58.644][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:05:58.645][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.650][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.657][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:05:58.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.661][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.663][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:05:58.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:58.678][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172393920].
biodb.DEBUG[2024-11-09 16:05:58.680][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:05:58.681][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:05:58.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:58.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:58.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:58.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:58.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:58.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:58.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:05:58.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:05:58.706][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:58.707][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:58.709][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-09 16:05:58.780][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:05:58.782][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:05:58.783][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:05:58.785][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:05:58.833][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:05:58.835][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-11-09 16:05:58.840][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-11-09 16:05:58.843][private$loadEntries] Creating entries from ids [3]: "172405768, 172404673, 172392942".
biodb.DEBUG[2024-11-09 16:05:58.845][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-09 16:05:58.846][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172405768, 172404673, 172392942".
biodb.TRACE[2024-11-09 16:05:58.848][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-09 16:05:58.849][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:05:58.851][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:05:58.852][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:05:58.853][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:05:58.854][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:05:58.856][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-09 16:05:58.858][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172405768,172404673,172392942/XML".
biodb.DEBUG[2024-11-09 16:05:58.860][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:05:58.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:05:58.863][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172405768,172404673,172392942/XML".
biodb.TRACE[2024-11-09 16:05:58.998][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172405768,172404673,172392942/XML).
biodb.TRACE[2024-11-09 16:05:59.149][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172405768.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172404673.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172392942.xml"
biodb.DEBUG[2024-11-09 16:05:59.154][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:05:59.156][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-09 16:05:59.157][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:05:59.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:59.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:59.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:59.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:59.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:59.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:59.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:59.174][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.184][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.186][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.194][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.196][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.198][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.204][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.206][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.208][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.214][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.216][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.235][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.236][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.245][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:59.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:59.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:59.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.255][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:59.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:59.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:59.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.265][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:59.266][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:59.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:59.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:59.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.275][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.276][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.278][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.285][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:59.286][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:59.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.288][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.290][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:59.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:59.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.295][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:59.296][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:59.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.298][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:59.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:59.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.305][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.306][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.314][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.316][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.318][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.319][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.324][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:59.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.338][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:59.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.353][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:59.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.367][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:59.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:59.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:59.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:59.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:59.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:59.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:59.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:59.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:59.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:59.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:59.449][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.451][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.459][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.461][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.463][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.469][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.471][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.473][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.479][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.481][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.489][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.491][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.493][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.499][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.501][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.503][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.509][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:59.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:59.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.513][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:59.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:59.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:59.520][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:59.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:59.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:59.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.529][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:59.530][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:59.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:59.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:59.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.539][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.541][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.543][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.549][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:59.551][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:59.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.553][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.555][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:59.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:59.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.560][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:59.561][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:59.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:59.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:59.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.570][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.571][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.580][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.581][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.583][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.590][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:59.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.604][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:59.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.620][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:59.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:59.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.657][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:59.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:05:59.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:05:59.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:05:59.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:05:59.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:05:59.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:05:59.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:05:59.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:05:59.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.737][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.738][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.740][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.747][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.748][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.757][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.758][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.761][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.769][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.770][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.779][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.781][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.790][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:59.791][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:59.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.795][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:05:59.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:05:59.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.800][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:59.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:59.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:05:59.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:05:59.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:59.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:59.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:05:59.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:05:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.821][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.823][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:05:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.830][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:59.831][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:59.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.833][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.835][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:05:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:05:59.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.840][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:59.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:59.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.844][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:05:59.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:05:59.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.850][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.852][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:05:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.860][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.862][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:05:59.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.871][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:05:59.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:05:59.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.885][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:05:59.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:05:59.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.900][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:05:59.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:05:59.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.914][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:05:59.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:05:59.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.928][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:05:59.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:05:59.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:05:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:05:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:05:59.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:05:59.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:05:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:05:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:05:59.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:00.025][self$createEntryFromContent] Accession numbers: 172405768, 172404673, 172392942.
biodb.DEBUG[2024-11-09 16:06:00.054][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:00.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:00.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:00.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:00.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:00.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:00.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:00.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:00.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.098][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.099][private$selectFields]
biodb.TRACE[2024-11-09 16:06:00.100][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:00.102][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:00.103][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.114][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.120][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:00.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.136][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172405768].
biodb.DEBUG[2024-11-09 16:06:00.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:00.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:00.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:00.147][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:00.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:00.149][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:00.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:00.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.161][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.162][private$selectFields]
biodb.TRACE[2024-11-09 16:06:00.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:00.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:00.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.167][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.168][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.173][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.175][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.176][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.178][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.179][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.180][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.184][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:00.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.199][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172404673].
biodb.DEBUG[2024-11-09 16:06:00.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:00.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:00.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:00.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:00.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:00.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:00.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:00.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.225][private$selectFields]
biodb.TRACE[2024-11-09 16:06:00.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:00.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:00.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.233][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.238][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.239][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.241][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:00.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.243][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.246][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:00.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:00.264][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:00.265][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:00.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:00.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:00.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:00.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:00.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:00.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:00.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:00.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:00.380][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:00.384][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:00.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-09 16:06:00.387][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:00.399][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-09 16:06:00.401][private$loadEntries] Creating entries from ids [3]: "172391226, 172389755, 172389592".
biodb.DEBUG[2024-11-09 16:06:00.410][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-09 16:06:00.412][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172391226, 172389755, 172389592".
biodb.TRACE[2024-11-09 16:06:00.414][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-11-09 16:06:00.451][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172391226.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172389755.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172389592.xml".
biodb.DEBUG[2024-11-09 16:06:00.453][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:00.454][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-09 16:06:00.456][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:00.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:00.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:00.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:00.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:00.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:00.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:00.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:00.474][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.478][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.484][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.485][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.488][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.494][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.495][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.504][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.505][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.508][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.514][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.515][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.524][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.525][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.527][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.534][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:00.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.537][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.539][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:00.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.543][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:00.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:00.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.547][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:00.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:00.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:00.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:00.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.557][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:00.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:00.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.563][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:00.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:00.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:00.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.573][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:00.575][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:00.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.577][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.578][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:00.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:00.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.583][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:00.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:00.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:00.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:00.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.593][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:00.595][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:00.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:00.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:00.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.603][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:00.604][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:00.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.630][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:00.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.644][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:00.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.659][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:00.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.673][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:00.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:00.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:00.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:00.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:00.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:00.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:00.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:00.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:00.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:00.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:00.741][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.745][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.751][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.753][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.762][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.763][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.765][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.772][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.773][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.782][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.783][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.785][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.791][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.793][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.795][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.801][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:00.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.805][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.807][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:00.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:00.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.812][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:00.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:00.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.815][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:00.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:00.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:00.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:00.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:00.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:00.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:00.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:00.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.841][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:00.843][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:00.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.847][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:00.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:00.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.851][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:00.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:00.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.863][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:00.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:00.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.869][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:00.870][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:00.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:00.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:00.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.879][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:00.880][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:00.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.883][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.884][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:00.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:00.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.889][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:00.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:00.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.903][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:00.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:00.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.918][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:00.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:00.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.932][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:00.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:00.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.946][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:00.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:00.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:00.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:00.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:00.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:00.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:00.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:00.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:00.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:00.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:00.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:01.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:01.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:01.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:01.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:01.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:01.014][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.015][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.017][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.024][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.025][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.034][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.035][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.043][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.045][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.047][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.053][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.055][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.063][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.064][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.067][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.073][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:01.074][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:01.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.076][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.078][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:01.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:01.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.083][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:01.084][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:01.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:01.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:01.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:01.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:01.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.096][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:01.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:01.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:01.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:01.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.106][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:01.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:01.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.112][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:01.113][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:01.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.115][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.117][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:01.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:01.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.122][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:01.123][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:01.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:01.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:01.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.132][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:01.133][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:01.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:01.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:01.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.142][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:01.143][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:01.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.145][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:01.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:01.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.152][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:01.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:01.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.166][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:01.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.181][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:01.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:01.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.195][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:01.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.209][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:01.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:01.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:01.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:01.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:01.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:01.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:01.313][self$createEntryFromContent] Accession numbers: 172391226, 172389755, 172389592.
biodb.DEBUG[2024-11-09 16:06:01.314][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:01.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:01.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:01.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:01.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:01.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:01.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:01.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:01.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.340][private$selectFields]
biodb.TRACE[2024-11-09 16:06:01.341][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:01.342][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:01.344][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.345][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.346][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.351][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.354][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.355][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.361][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:01.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-09 16:06:01.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:01.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:01.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:01.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:01.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:01.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:01.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:01.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.402][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.403][private$selectFields]
biodb.TRACE[2024-11-09 16:06:01.404][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:01.405][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:01.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.407][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.409][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.411][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.418][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.422][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.424][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:01.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389755].
biodb.DEBUG[2024-11-09 16:06:01.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:01.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:01.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:01.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:01.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:01.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:01.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:01.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.465][private$selectFields]
biodb.TRACE[2024-11-09 16:06:01.466][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:01.467][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:01.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.473][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.476][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.478][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.479][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.480][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:01.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.483][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.485][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.486][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:01.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:01.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:01.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:01.502][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389592].
biodb.DEBUG[2024-11-09 16:06:01.503][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:01.504][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:01.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:01.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:01.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:01.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:01.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:01.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:01.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:01.526][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:01.530][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:01.531][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:01.533][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:01.606][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:01.608][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:01.609][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:01.611][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:02.184][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:02.187][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-11-09 16:06:02.193][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-11-09 16:06:02.196][private$loadEntries] Creating entries from ids [2]: "172399902, 172354789".
biodb.DEBUG[2024-11-09 16:06:02.197][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-09 16:06:02.199][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172399902, 172354789".
biodb.TRACE[2024-11-09 16:06:02.200][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-11-09 16:06:02.202][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:06:02.203][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:02.204][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:02.206][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:06:02.207][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:06:02.221][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-09 16:06:02.224][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172399902,172354789/XML".
biodb.DEBUG[2024-11-09 16:06:02.226][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:02.227][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:02.229][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172399902,172354789/XML".
biodb.TRACE[2024-11-09 16:06:02.341][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172399902,172354789/XML).
biodb.TRACE[2024-11-09 16:06:02.472][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172399902.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172354789.xml"
biodb.DEBUG[2024-11-09 16:06:02.476][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:06:02.477][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-09 16:06:02.479][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:02.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:02.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:02.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:02.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:02.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:02.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:02.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:02.496][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:02.498][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:02.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:02.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:02.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.506][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.508][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.510][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.516][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.518][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.520][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.526][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.528][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.536][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.545][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.557][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.558][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.561][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.567][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:02.568][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:02.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.571][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.572][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:02.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:02.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.577][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:02.579][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:02.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.581][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:02.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:02.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.587][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:02.589][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:02.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:02.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:02.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:02.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:02.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:02.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:02.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.607][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:02.609][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:02.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.612][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:02.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:02.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.617][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:02.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:02.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:02.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:02.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.628][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:02.629][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:02.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:02.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:02.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.638][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:02.639][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:02.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:02.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:02.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.648][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:02.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:02.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.677][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:02.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.691][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:02.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.705][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:02.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:02.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:02.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:02.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:02.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:02.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:02.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:02.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:02.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:02.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:02.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:02.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:02.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:02.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:02.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:02.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:02.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:02.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:02.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:02.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:02.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:02.774][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:02.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:02.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.777][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:02.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:02.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.784][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.785][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.787][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.794][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.795][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.797][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.804][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.805][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.807][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.814][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.815][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.823][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.825][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.827][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.833][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:02.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:02.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.837][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.838][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.843][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:02.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:02.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.847][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:02.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:02.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:02.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.857][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:02.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:02.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:02.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:02.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.867][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:02.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:02.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.873][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:02.874][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:02.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.876][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.878][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.883][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:02.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:02.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.886][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:02.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:02.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.893][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:02.894][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:02.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.896][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:02.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:02.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.903][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:02.904][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:02.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.913][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:02.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:02.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.927][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:02.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.942][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:02.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:02.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.964][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:02.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:02.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:02.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:02.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:03.060][self$createEntryFromContent] Accession numbers: 172399902, 172354789.
biodb.DEBUG[2024-11-09 16:06:03.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:03.063][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:03.064][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:03.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:03.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:03.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:03.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:03.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:03.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.088][private$selectFields]
biodb.TRACE[2024-11-09 16:06:03.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:03.090][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:03.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.096][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.099][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.101][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.103][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.105][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.108][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.109][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:03.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172399902].
biodb.DEBUG[2024-11-09 16:06:03.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:03.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:03.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:03.136][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:03.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:03.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:03.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:03.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.177][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.178][private$selectFields]
biodb.TRACE[2024-11-09 16:06:03.179][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:03.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:03.181][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.183][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.184][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.186][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.201][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.207][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:03.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:03.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:03.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:03.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:03.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:03.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:03.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:03.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.249][private$selectFields]
biodb.TRACE[2024-11-09 16:06:03.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:03.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:03.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.257][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.264][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:03.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.269][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.270][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:03.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172354789].
biodb.DEBUG[2024-11-09 16:06:03.287][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:03.288][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:03.298][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:03.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:03.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.303][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:03.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:06:03.314][biodb::testThat]
biodb.INFO [2024-11-09 16:06:03.315][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-11-09 16:06:03.316][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:03.317][biodb::testThat]
biodb.TRACE[2024-11-09 16:06:03.321][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:06:03.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:06:03.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:06:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:06:03.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:03.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:03.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:03.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:03.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:03.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:03.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:03.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:03.398][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:03.402][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:03.403][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-11-09 16:06:03.405][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:03.416][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-11-09 16:06:03.418][private$loadEntries] Creating entries from ids [2]: "172346151, 172345958".
biodb.DEBUG[2024-11-09 16:06:03.420][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-09 16:06:03.421][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172346151, 172345958".
biodb.TRACE[2024-11-09 16:06:03.423][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-11-09 16:06:03.446][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172346151.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172345958.xml".
biodb.DEBUG[2024-11-09 16:06:03.447][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:03.449][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-09 16:06:03.450][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:03.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:03.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:03.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:03.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:03.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:03.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:03.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:03.467][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.471][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.477][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.478][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.487][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.488][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.491][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.497][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.499][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.507][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.508][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.511][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.517][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.518][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.520][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.527][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:03.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:03.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.532][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:03.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:03.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.537][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:03.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:03.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:03.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:03.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.546][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:03.548][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:03.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.551][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:03.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:03.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:03.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:03.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.566][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:03.567][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:03.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.571][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:03.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:03.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.576][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:03.577][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:03.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.586][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:03.587][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:03.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.589][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.591][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.596][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:03.597][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:03.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.599][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.601][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:03.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:03.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.606][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:03.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.621][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:03.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.636][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:03.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.650][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:03.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.664][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:03.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:03.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:03.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:03.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:03.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:03.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:03.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:03.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:03.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:03.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:03.732][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.736][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.742][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.743][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.746][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.752][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.753][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.762][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.763][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.780][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.781][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.790][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.791][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.800][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:03.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:03.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.810][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:03.811][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:03.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:03.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:03.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.819][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:03.821][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:03.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.823][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:03.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:03.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:03.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:03.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.833][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:03.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:03.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.839][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:03.840][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:03.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.843][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.844][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:03.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:03.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.849][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:03.850][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.853][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:03.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:03.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.859][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:03.860][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:03.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.862][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:03.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:03.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.869][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:03.870][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:03.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.872][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:03.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:03.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.879][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:03.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.883][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:03.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.893][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:03.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.907][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:03.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:03.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.922][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:03.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:03.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.936][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:03.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:03.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:03.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:03.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:03.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:03.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:03.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:04.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:04.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:04.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:04.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:04.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:04.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:04.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:04.017][self$createEntryFromContent] Accession numbers: 172346151, 172345958.
biodb.DEBUG[2024-11-09 16:06:04.018][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:04.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.044][private$selectFields]
biodb.TRACE[2024-11-09 16:06:04.046][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:04.047][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:04.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.049][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.050][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.054][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.055][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.057][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.058][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.060][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.061][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.064][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.065][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.081][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-09 16:06:04.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:04.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.106][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.107][private$selectFields]
biodb.TRACE[2024-11-09 16:06:04.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:04.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:04.111][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.112][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.115][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.120][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.121][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.122][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.125][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.127][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.128][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:04.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172346151].
biodb.DEBUG[2024-11-09 16:06:04.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.155][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.169][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.200][private$selectFields]
biodb.TRACE[2024-11-09 16:06:04.202][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:04.203][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:04.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.205][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.209][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.214][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.216][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.218][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.222][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172345958].
biodb.DEBUG[2024-11-09 16:06:04.240][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:04.241][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:04.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:04.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:04.266][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:04.268][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:04.269][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:04.358][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:04.359][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:04.361][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:04.363][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:04.411][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:04.414][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-11-09 16:06:04.419][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-11-09 16:06:04.422][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:04.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:04.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.448][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.449][private$selectFields]
biodb.TRACE[2024-11-09 16:06:04.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:04.452][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:04.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.457][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.460][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.463][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.465][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.469][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.470][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:04.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.486][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172405768].
biodb.DEBUG[2024-11-09 16:06:04.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:04.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.511][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.513][private$selectFields]
biodb.TRACE[2024-11-09 16:06:04.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:04.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:04.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.521][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.528][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.534][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:04.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172404673].
biodb.DEBUG[2024-11-09 16:06:04.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:04.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.576][private$selectFields]
biodb.TRACE[2024-11-09 16:06:04.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:04.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:04.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.584][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.589][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.592][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:04.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.598][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:04.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.614][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:04.615][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:04.616][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:04.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:04.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:04.690][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:04.693][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:04.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-11-09 16:06:04.696][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:04.708][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-11-09 16:06:04.711][private$loadEntries] Creating entries from ids [2]: "172385817, 172384230".
biodb.DEBUG[2024-11-09 16:06:04.712][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-09 16:06:04.714][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172385817, 172384230".
biodb.TRACE[2024-11-09 16:06:04.716][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-11-09 16:06:04.738][loadFileContents] Loaded 2 files from cache: [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172385817.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172384230.xml".
biodb.DEBUG[2024-11-09 16:06:04.740][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:04.742][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-09 16:06:04.743][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:04.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:04.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:04.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:04.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:04.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:04.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:04.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:04.761][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:04.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:04.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.764][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:04.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:04.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.771][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.772][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.781][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.783][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.785][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.801][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.803][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.805][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.812][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.813][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.815][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.822][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.823][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.832][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:04.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.838][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:04.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:04.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.843][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:04.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:04.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:04.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:04.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.853][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:04.854][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:04.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.856][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:04.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:04.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:04.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:04.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.866][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:04.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:04.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.873][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:04.874][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:04.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.876][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.878][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:04.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:04.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.882][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:04.884][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:04.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.886][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:04.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:04.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.892][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:04.894][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:04.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.896][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.898][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:04.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:04.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.903][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:04.904][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:04.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:04.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:04.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.913][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:04.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:04.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.941][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:04.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:04.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.955][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:04.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:04.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.970][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:04.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:04.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:04.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:04.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:04.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:04.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:04.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:05.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:05.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:05.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:05.032][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:05.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:05.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:05.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:05.039][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.042][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.049][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.050][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.052][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.059][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.060][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.062][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.069][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.070][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.079][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.080][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.082][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.088][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.090][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.098][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:05.100][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:05.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.102][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.104][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:05.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:05.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.108][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:05.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:05.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:05.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:05.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.118][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:05.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:05.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.123][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:05.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:05.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:05.130][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:05.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:05.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.138][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:05.139][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:05.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.143][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:05.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:05.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.148][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:05.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:05.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:05.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:05.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.158][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:05.159][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:05.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.163][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:05.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:05.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.168][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:05.169][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:05.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:05.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.178][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:05.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:05.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.192][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:05.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:05.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.213][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:05.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:05.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.228][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:05.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:05.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:05.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:05.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:05.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:05.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:05.325][self$createEntryFromContent] Accession numbers: 172385817, 172384230.
biodb.DEBUG[2024-11-09 16:06:05.327][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:05.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:05.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:05.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:05.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:05.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:05.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:05.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:05.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.352][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.353][private$selectFields]
biodb.TRACE[2024-11-09 16:06:05.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:05.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:05.357][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.359][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.361][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.363][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.364][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.366][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.367][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.369][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.373][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.375][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:05.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-09 16:06:05.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:05.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:05.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:05.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:05.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:05.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:05.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:05.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.416][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.418][private$selectFields]
biodb.TRACE[2024-11-09 16:06:05.419][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:05.420][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:05.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.426][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.427][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.430][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.433][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.437][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.439][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:05.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.455][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172385817].
biodb.DEBUG[2024-11-09 16:06:05.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:05.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:05.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:05.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:05.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:05.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:05.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.481][private$selectFields]
biodb.TRACE[2024-11-09 16:06:05.482][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:05.483][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:05.484][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.487][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.495][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.496][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:05.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.501][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.502][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:05.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:05.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:05.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:05.518][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172384230].
biodb.DEBUG[2024-11-09 16:06:05.519][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:05.520][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:05.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:05.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:05.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:05.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:05.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:05.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:05.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:05.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:05.546][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:05.547][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:05.549][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:05.636][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:05.638][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:05.639][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:05.641][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:05.689][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:05.693][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-11-09 16:06:05.698][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-11-09 16:06:05.702][private$loadEntries] Creating entries from ids [2]: "172319991, 172308137".
biodb.DEBUG[2024-11-09 16:06:05.703][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-09 16:06:05.705][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172319991, 172308137".
biodb.TRACE[2024-11-09 16:06:05.707][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-11-09 16:06:05.708][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:06:05.709][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:05.711][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:05.712][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:06:05.713][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:06:05.714][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-09 16:06:05.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172319991,172308137/XML".
biodb.DEBUG[2024-11-09 16:06:05.719][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:05.720][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:05.721][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172319991,172308137/XML".
biodb.TRACE[2024-11-09 16:06:05.890][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172319991,172308137/XML).
biodb.TRACE[2024-11-09 16:06:06.034][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172319991.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172308137.xml"
biodb.DEBUG[2024-11-09 16:06:06.038][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:06:06.039][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-09 16:06:06.041][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:06.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:06.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:06.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:06.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:06.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:06.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:06.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:06.058][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.062][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.078][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.079][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.088][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.089][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.098][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.099][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.101][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.108][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.109][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.118][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.120][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.128][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:06.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:06.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.133][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:06.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:06.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.138][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:06.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:06.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:06.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:06.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:06.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:06.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.151][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:06.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:06.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:06.159][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:06.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:06.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:06.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.168][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:06.169][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:06.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.173][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:06.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:06.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.178][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:06.179][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:06.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.188][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:06.189][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:06.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.198][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:06.199][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:06.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.202][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:06.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:06.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.208][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:06.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:06.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.237][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:06.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:06.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.265][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:06.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:06.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:06.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:06.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:06.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:06.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:06.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:06.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:06.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:06.333][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.343][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.345][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.353][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.354][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.363][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.364][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.373][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.375][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.377][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.383][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.384][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.387][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.393][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:06.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:06.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.398][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:06.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:06.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.403][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:06.404][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:06.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.407][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:06.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:06.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.413][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:06.414][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:06.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.417][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:06.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.423][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:06.424][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:06.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:06.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:06.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.433][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:06.434][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:06.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.436][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.438][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:06.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:06.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.443][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:06.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.446][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.453][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:06.454][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:06.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:06.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:06.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.463][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:06.464][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:06.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.468][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:06.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:06.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.473][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:06.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:06.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:06.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.509][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:06.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:06.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.524][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:06.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:06.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:06.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:06.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:06.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:06.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:06.620][self$createEntryFromContent] Accession numbers: 172319991, 172308137.
biodb.DEBUG[2024-11-09 16:06:06.621][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:06.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:06.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:06.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:06.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:06.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:06.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:06.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:06.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.642][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.648][private$selectFields]
biodb.TRACE[2024-11-09 16:06:06.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:06.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:06.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.661][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.662][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.663][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.669][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:06.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.685][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:06.686][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:06.687][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:06.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:06.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:06.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:06.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:06.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:06.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.711][private$selectFields]
biodb.TRACE[2024-11-09 16:06:06.712][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:06.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:06.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.719][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.725][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.726][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.731][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:06.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172319991].
biodb.DEBUG[2024-11-09 16:06:06.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:06.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:06.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:06.757][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:06.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:06.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:06.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.772][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.773][private$selectFields]
biodb.TRACE[2024-11-09 16:06:06.774][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:06.775][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:06.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.781][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.782][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.783][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.788][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.789][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.794][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:06.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172308137].
biodb.DEBUG[2024-11-09 16:06:06.811][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:06.812][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:06.823][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:06.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.828][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:06:06.839][biodb::testThat]
biodb.INFO [2024-11-09 16:06:06.840][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-11-09 16:06:06.841][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:06.842][biodb::testThat]
biodb.TRACE[2024-11-09 16:06:06.846][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:06:06.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:06:06.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.851][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:06:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:06:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:06.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:06.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:06.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:06.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:06.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:06.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:06.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:06.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:06.925][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:06.928][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:06.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-09 16:06:06.932][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:06.934][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-09 16:06:06.936][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:06.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:06.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:06.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:06.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:06.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:06.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:06.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:06.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.963][private$selectFields]
biodb.TRACE[2024-11-09 16:06:06.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:06.965][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:06.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.975][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:06.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.980][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.982][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.984][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:06.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:06.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394306].
biodb.DEBUG[2024-11-09 16:06:07.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.025][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.027][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.028][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.034][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.038][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.039][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.041][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.043][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.045][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.046][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.062][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-09 16:06:07.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.077][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.088][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.090][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.092][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.093][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.094][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.096][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.099][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.101][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.103][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.106][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.108][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.109][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.120][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.125][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172393920].
biodb.DEBUG[2024-11-09 16:06:07.126][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:07.127][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:07.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:07.149][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:07.152][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:07.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-09 16:06:07.155][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:07.158][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-09 16:06:07.160][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:07.161][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.185][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.186][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.187][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.188][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.189][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.190][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.192][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.194][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.201][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.207][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172405768].
biodb.DEBUG[2024-11-09 16:06:07.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.248][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.261][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.262][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.264][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.269][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172404673].
biodb.DEBUG[2024-11-09 16:06:07.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.311][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.321][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.323][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.326][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.334][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.335][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.340][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.356][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:07.357][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:07.358][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:07.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:07.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:07.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:07.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:07.451][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:07.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-09 16:06:07.454][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:07.456][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-09 16:06:07.458][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:07.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.483][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.484][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.486][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.487][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.488][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.489][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.493][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.495][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.499][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.500][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.504][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.506][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-09 16:06:07.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.546][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.547][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.548][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.551][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.552][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.553][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.555][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.562][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.568][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389755].
biodb.DEBUG[2024-11-09 16:06:07.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.609][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.610][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.623][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.624][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.625][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.627][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.631][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.646][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389592].
biodb.DEBUG[2024-11-09 16:06:07.648][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:07.649][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:07.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:07.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:07.673][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:07.675][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-09 16:06:07.676][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:07.680][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-09 16:06:07.682][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:07.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.696][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.708][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.711][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.721][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.722][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.723][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.728][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.729][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.752][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172399902].
biodb.DEBUG[2024-11-09 16:06:07.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.777][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.778][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.781][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.793][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.799][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:07.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:07.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:07.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.839][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.840][private$selectFields]
biodb.TRACE[2024-11-09 16:06:07.842][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:07.843][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:07.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.845][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.849][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.853][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.855][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.856][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:07.857][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.858][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.860][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.861][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:07.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172354789].
biodb.DEBUG[2024-11-09 16:06:07.878][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:07.880][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:07.906][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:07.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:07.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.911][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:07.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:07.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.920][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:07.922][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:07.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.925][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.926][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.929][ef$get] fields variable is a list.
biodb.INFO [2024-11-09 16:06:07.931][biodb::testThat]
biodb.INFO [2024-11-09 16:06:07.932][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-11-09 16:06:07.933][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:07.934][biodb::testThat]
biodb.TRACE[2024-11-09 16:06:07.938][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:06:07.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:06:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.943][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:06:07.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:06:07.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:07.981][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:07.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:07.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:07.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:07.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:07.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:07.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:07.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:07.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:08.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:08.007][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:08.011][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:08.012][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:08.014][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:08.086][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:08.087][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:08.089][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:08.091][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:08.162][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:08.166][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-11-09 16:06:08.171][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-11-09 16:06:08.174][private$loadEntries] Creating entries from ids [3]: "172406857, 172406766, 172406074".
biodb.DEBUG[2024-11-09 16:06:08.176][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-09 16:06:08.178][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172406857, 172406766, 172406074".
biodb.TRACE[2024-11-09 16:06:08.179][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-09 16:06:08.181][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:06:08.182][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:08.183][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:08.185][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:06:08.186][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:06:08.187][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-09 16:06:08.189][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406857,172406766,172406074/XML".
biodb.DEBUG[2024-11-09 16:06:08.192][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:08.193][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:08.194][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406857,172406766,172406074/XML".
biodb.TRACE[2024-11-09 16:06:08.347][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406857,172406766,172406074/XML).
biodb.TRACE[2024-11-09 16:06:08.477][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406857.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406766.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406074.xml"
biodb.DEBUG[2024-11-09 16:06:08.482][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:06:08.484][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-09 16:06:08.485][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:08.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:08.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:08.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:08.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:08.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:08.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:08.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:08.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:08.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:08.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:08.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:08.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.513][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.514][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.516][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.523][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.524][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.533][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.534][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.543][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.544][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.553][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.554][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.563][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:08.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:08.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.566][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.568][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.573][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:08.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:08.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:08.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:08.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:08.595][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:08.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:08.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:08.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:08.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.608][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:08.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:08.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.614][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:08.615][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:08.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:08.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:08.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.626][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:08.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:08.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:08.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:08.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.637][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:08.639][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:08.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.643][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:08.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:08.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.647][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:08.649][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:08.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.651][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:08.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:08.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.658][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.672][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:08.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.687][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:08.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.701][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:08.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.716][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:08.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:08.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:08.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:08.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:08.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:08.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:08.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:08.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:08.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:08.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:08.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:08.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:08.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:08.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:08.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:08.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:08.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:08.786][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:08.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:08.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.796][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.797][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.799][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.806][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.807][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.809][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.816][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.817][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.819][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.826][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.827][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.829][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.836][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.837][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.846][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:08.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:08.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.849][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.851][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:08.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.856][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:08.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:08.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.861][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:08.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:08.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:08.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:08.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.869][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:08.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:08.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.876][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:08.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:08.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.879][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:08.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:08.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.886][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:08.887][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:08.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.889][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.891][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:08.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:08.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.896][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:08.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:08.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.899][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:08.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:08.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.906][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:08.907][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:08.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.909][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.911][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:08.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:08.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.916][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:08.917][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:08.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.919][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:08.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.926][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:08.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:08.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.940][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:08.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:08.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.955][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:08.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.969][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:08.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:08.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.984][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:08.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:08.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:08.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:08.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:09.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:09.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:09.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:09.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:09.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:09.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:09.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:09.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:09.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:09.062][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.063][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.065][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.072][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.073][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.082][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.083][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.085][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.092][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.093][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.102][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.103][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.105][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.112][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.113][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.116][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.122][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:09.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:09.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.127][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:09.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:09.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.132][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:09.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:09.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.136][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.137][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:09.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:09.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.142][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:09.143][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:09.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.146][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.147][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:09.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:09.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.152][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:09.153][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:09.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.156][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:09.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:09.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.162][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:09.163][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:09.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.166][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.167][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:09.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:09.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.172][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:09.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:09.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:09.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:09.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.182][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:09.183][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:09.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.186][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:09.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.192][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:09.193][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:09.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:09.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:09.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:09.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.217][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:09.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:09.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.246][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:09.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:09.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.260][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:09.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:09.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:09.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:09.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:09.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:09.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:09.357][self$createEntryFromContent] Accession numbers: 172406857, 172406766, 172406074.
biodb.DEBUG[2024-11-09 16:06:09.358][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:09.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:09.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:09.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:09.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:09.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:09.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:09.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.384][private$selectFields]
biodb.TRACE[2024-11-09 16:06:09.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:09.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:09.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.389][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.390][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.392][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.399][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.404][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.405][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:09.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.429][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406857].
biodb.DEBUG[2024-11-09 16:06:09.430][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:09.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:09.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:09.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:09.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:09.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:09.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:09.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.455][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.456][private$selectFields]
biodb.TRACE[2024-11-09 16:06:09.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:09.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:09.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.464][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.467][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.469][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.471][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.477][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:09.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406766].
biodb.DEBUG[2024-11-09 16:06:09.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:09.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:09.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:09.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:09.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:09.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:09.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:09.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.518][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.519][private$selectFields]
biodb.TRACE[2024-11-09 16:06:09.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:09.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:09.523][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.524][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.532][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.535][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:09.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.539][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.541][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:09.557][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406074].
biodb.DEBUG[2024-11-09 16:06:09.558][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:09.559][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:09.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:09.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:09.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:09.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:09.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:09.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:09.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:09.580][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:09.584][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:09.585][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:09.587][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:09.663][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:09.664][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:09.666][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:09.668][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:09.724][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:09.727][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-11-09 16:06:09.732][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-11-09 16:06:09.735][private$loadEntries] Creating entries from ids [3]: "172406933, 172406759, 172406484".
biodb.DEBUG[2024-11-09 16:06:09.737][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-09 16:06:09.738][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172406933, 172406759, 172406484".
biodb.TRACE[2024-11-09 16:06:09.740][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-09 16:06:09.741][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:06:09.743][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:09.744][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:09.745][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:06:09.746][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:06:09.747][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-09 16:06:09.750][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406933,172406759,172406484/XML".
biodb.DEBUG[2024-11-09 16:06:09.752][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:09.753][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:09.755][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406933,172406759,172406484/XML".
biodb.TRACE[2024-11-09 16:06:09.904][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406933,172406759,172406484/XML).
biodb.TRACE[2024-11-09 16:06:10.040][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406933.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406759.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406484.xml"
biodb.DEBUG[2024-11-09 16:06:10.046][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:06:10.047][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-09 16:06:10.049][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:10.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:10.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:10.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:10.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:10.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:10.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:10.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:10.066][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.067][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.070][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.076][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.077][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.086][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.087][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.090][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.096][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.097][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.106][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.107][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.116][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.117][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.120][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.126][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:10.127][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:10.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.131][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:10.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:10.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.136][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:10.137][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:10.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:10.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:10.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.146][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:10.147][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:10.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:10.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:10.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.156][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.157][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.166][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:10.167][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:10.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.170][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.171][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:10.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:10.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.176][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:10.177][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:10.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.179][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:10.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:10.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.186][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.187][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.189][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.196][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.197][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.199][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.201][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.206][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:10.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.220][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:10.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.241][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:10.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.261][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:10.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:10.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:10.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:10.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:10.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:10.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:10.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:10.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:10.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:10.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:10.344][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.346][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.348][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.354][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.355][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.364][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.365][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.368][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.374][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.375][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.378][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.384][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.385][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.394][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.398][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.405][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:10.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:10.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.410][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:10.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:10.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.415][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:10.416][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:10.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.418][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:10.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:10.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.425][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:10.426][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:10.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:10.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:10.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.444][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:10.445][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:10.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.448][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.449][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:10.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:10.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.454][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:10.455][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:10.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.457][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:10.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:10.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.464][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.465][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.474][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.475][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.477][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.483][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:10.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.498][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:10.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.512][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:10.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.526][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:10.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.540][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:10.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:10.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:10.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:10.594][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:10.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:10.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:10.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:10.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:10.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:10.608][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.610][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.612][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.618][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.619][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.622][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.629][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.630][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.633][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.639][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.640][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.656][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.658][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.666][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.668][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.670][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.677][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:10.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:10.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.680][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:10.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:10.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.687][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:10.688][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:10.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.691][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:10.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:10.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:10.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:10.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:10.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:10.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.707][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.708][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:10.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.717][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:10.718][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:10.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:10.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.727][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:10.728][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:10.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:10.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.736][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.738][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.740][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:10.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.746][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.748][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:10.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.756][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:10.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.771][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:10.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.785][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:10.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:10.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.799][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:10.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.814][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:10.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:10.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:10.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:10.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:10.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:10.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:10.909][self$createEntryFromContent] Accession numbers: 172406933, 172406759, 172406484.
biodb.DEBUG[2024-11-09 16:06:10.911][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:10.913][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:10.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:10.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:10.922][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:10.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:10.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:10.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:10.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.936][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:10.937][private$selectFields]
biodb.TRACE[2024-11-09 16:06:10.938][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:10.939][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:10.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:10.941][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.950][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:10.952][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:10.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.958][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:10.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.974][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406933].
biodb.DEBUG[2024-11-09 16:06:10.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:10.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:10.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:10.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:10.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:10.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:10.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:10.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:10.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:10.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:10.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:10.999][private$selectFields]
biodb.TRACE[2024-11-09 16:06:11.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:11.001][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:11.002][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.008][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.009][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.013][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.015][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.021][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:11.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.037][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406759].
biodb.DEBUG[2024-11-09 16:06:11.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:11.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.068][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.069][private$selectFields]
biodb.TRACE[2024-11-09 16:06:11.070][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:11.072][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:11.073][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.075][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.078][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.082][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.084][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.085][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.086][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.090][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.091][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:11.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406484].
biodb.DEBUG[2024-11-09 16:06:11.109][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:11.110][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:11.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.148][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:11.159][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:11.162][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:11.164][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-09 16:06:11.166][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:11.168][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-09 16:06:11.170][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:11.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:11.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.196][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.197][private$selectFields]
biodb.TRACE[2024-11-09 16:06:11.198][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:11.200][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:11.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.202][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.205][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.213][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.217][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.219][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:11.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.235][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394306].
biodb.DEBUG[2024-11-09 16:06:11.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:11.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.261][private$selectFields]
biodb.TRACE[2024-11-09 16:06:11.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:11.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:11.265][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.276][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.277][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.282][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.283][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:11.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.299][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-09 16:06:11.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:11.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.325][private$selectFields]
biodb.TRACE[2024-11-09 16:06:11.326][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:11.327][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:11.328][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.340][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.341][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.342][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.346][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:11.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172393920].
biodb.DEBUG[2024-11-09 16:06:11.363][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:11.364][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:11.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:11.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:11.388][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:11.390][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-09 16:06:11.392][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:11.394][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-09 16:06:11.396][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:11.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:11.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.422][private$selectFields]
biodb.TRACE[2024-11-09 16:06:11.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:11.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:11.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.428][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.430][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.432][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.441][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.443][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:11.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172405768].
biodb.DEBUG[2024-11-09 16:06:11.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.461][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:11.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.490][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.492][private$selectFields]
biodb.TRACE[2024-11-09 16:06:11.493][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:11.494][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:11.495][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.496][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.497][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.501][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.502][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.505][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.506][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.507][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.508][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.509][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.513][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:11.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172404673].
biodb.DEBUG[2024-11-09 16:06:11.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:11.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.555][private$selectFields]
biodb.TRACE[2024-11-09 16:06:11.556][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:11.557][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:11.558][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.561][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.568][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.570][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:11.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.576][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:11.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:11.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:11.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:11.592][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:11.593][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:11.594][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:11.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:11.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:11.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:11.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:11.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:11.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:11.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:11.643][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:11.646][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:11.648][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:11.650][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:11.730][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:11.732][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:11.734][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:11.735][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:11.790][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:11.793][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-11-09 16:06:11.798][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-11-09 16:06:11.802][private$loadEntries] Creating entries from ids [3]: "172407421, 172407233, 172406314".
biodb.DEBUG[2024-11-09 16:06:11.803][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-09 16:06:11.805][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172407421, 172407233, 172406314".
biodb.TRACE[2024-11-09 16:06:11.807][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-09 16:06:11.809][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:06:11.810][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:11.811][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:11.812][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:06:11.814][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:06:11.815][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-09 16:06:11.817][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407421,172407233,172406314/XML".
biodb.DEBUG[2024-11-09 16:06:11.820][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:11.821][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:11.823][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407421,172407233,172406314/XML".
biodb.TRACE[2024-11-09 16:06:11.953][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407421,172407233,172406314/XML).
biodb.TRACE[2024-11-09 16:06:12.054][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172407421.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172407233.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406314.xml"
biodb.DEBUG[2024-11-09 16:06:12.059][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:06:12.061][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-09 16:06:12.062][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:12.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:12.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:12.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:12.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:12.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:12.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:12.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:12.079][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.080][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.083][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.089][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.090][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.092][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.099][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.100][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.102][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.109][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.110][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.119][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.120][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.129][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.130][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.138][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:12.140][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:12.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.143][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.148][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:12.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:12.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.152][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:12.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.158][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:12.159][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:12.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.161][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:12.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:12.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.168][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.169][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.178][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:12.179][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:12.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.182][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:12.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:12.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.187][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:12.189][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:12.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:12.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:12.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.197][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.198][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.202][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.207][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.208][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.210][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.217][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:12.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.231][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:12.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.245][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:12.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.284][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:12.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:12.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:12.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:12.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:12.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:12.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:12.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:12.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:12.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:12.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:12.354][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.355][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.364][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.365][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.374][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.375][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.378][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.384][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.386][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.395][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.396][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.398][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.405][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.406][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.415][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:12.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:12.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.418][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.425][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:12.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:12.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.428][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:12.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:12.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.435][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:12.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:12.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.448][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.455][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:12.456][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:12.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.465][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:12.466][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:12.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.468][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:12.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:12.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.475][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.476][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.478][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.485][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.486][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.488][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.495][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:12.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.537][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.552][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:12.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:12.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:12.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:12.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:12.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:12.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:12.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:12.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:12.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:12.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:12.620][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.621][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.630][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.631][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.633][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.640][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.641][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.650][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.651][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.677][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.678][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.680][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.687][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:12.688][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:12.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.692][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:12.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:12.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.697][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:12.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:12.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.707][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:12.708][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:12.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:12.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.717][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.718][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.721][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:12.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.727][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:12.728][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:12.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.731][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:12.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:12.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.737][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:12.738][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:12.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.741][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.742][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:12.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:12.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.747][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.748][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:12.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.757][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.758][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.760][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.767][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:12.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:12.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.781][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:12.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:12.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.796][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:12.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:12.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.810][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:12.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:12.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.824][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:12.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.839][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:12.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:12.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:12.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:12.920][self$createEntryFromContent] Accession numbers: 172407421, 172407233, 172406314.
biodb.DEBUG[2024-11-09 16:06:12.921][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:12.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:12.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:12.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:12.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:12.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:12.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:12.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:12.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.946][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:12.948][private$selectFields]
biodb.TRACE[2024-11-09 16:06:12.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:12.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:12.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:12.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.956][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:12.963][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:12.964][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.965][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.967][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.968][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:12.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.979][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:12.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:12.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:12.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407421].
biodb.DEBUG[2024-11-09 16:06:12.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:12.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:12.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:12.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:12.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:12.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:12.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:12.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:13.010][private$selectFields]
biodb.TRACE[2024-11-09 16:06:13.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:13.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:13.013][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:13.014][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.018][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.019][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.020][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.023][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:13.025][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:13.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.031][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.047][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407233].
biodb.DEBUG[2024-11-09 16:06:13.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:13.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:13.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:13.057][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:13.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:13.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:13.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:13.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.071][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:13.072][private$selectFields]
biodb.TRACE[2024-11-09 16:06:13.080][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:13.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:13.083][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:13.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.088][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.089][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.091][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.093][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.094][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:13.095][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:13.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.101][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:13.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.118][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406314].
biodb.DEBUG[2024-11-09 16:06:13.119][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:13.120][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:13.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:13.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:13.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:13.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:13.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:13.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:13.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:13.142][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:13.146][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:13.147][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:13.149][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:13.221][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:13.222][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:13.224][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:13.226][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:13.281][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:13.283][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-11-09 16:06:13.288][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-11-09 16:06:13.291][private$loadEntries] Creating entries from ids [3]: "172407489, 172407483, 172407245".
biodb.DEBUG[2024-11-09 16:06:13.293][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-09 16:06:13.295][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172407489, 172407483, 172407245".
biodb.TRACE[2024-11-09 16:06:13.296][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-09 16:06:13.298][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:06:13.299][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:13.300][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:13.302][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:06:13.303][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:06:13.304][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-09 16:06:13.306][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407489,172407483,172407245/XML".
biodb.DEBUG[2024-11-09 16:06:13.309][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:13.310][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:13.312][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407489,172407483,172407245/XML".
biodb.TRACE[2024-11-09 16:06:13.393][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407489,172407483,172407245/XML).
biodb.TRACE[2024-11-09 16:06:13.568][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172407489.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172407483.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172407245.xml"
biodb.DEBUG[2024-11-09 16:06:13.573][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:06:13.574][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-09 16:06:13.576][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:13.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:13.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:13.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:13.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:13.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:13.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:13.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:13.593][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:13.594][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:13.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:13.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:13.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.603][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.604][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.612][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.614][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.617][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.623][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.624][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.627][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.633][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.634][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.637][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.643][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.644][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.653][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:13.654][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:13.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.656][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.658][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:13.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:13.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.663][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:13.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:13.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.666][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.668][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:13.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:13.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.673][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:13.674][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:13.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.676][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:13.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:13.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:13.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:13.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:13.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.692][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:13.694][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:13.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.696][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.697][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:13.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:13.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.702][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:13.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:13.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:13.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:13.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.712][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:13.713][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:13.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:13.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.722][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:13.723][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:13.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.727][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:13.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:13.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:13.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.761][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:13.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.775][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:13.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:13.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:13.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:13.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:13.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:13.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:13.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:13.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:13.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:13.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:13.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:13.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:13.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:13.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:13.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:13.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:13.857][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:13.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:13.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.871][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:13.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.879][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.880][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.882][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:13.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.889][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.890][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.893][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.899][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.901][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.903][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.910][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.911][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.913][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.920][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.921][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.923][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.930][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:13.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:13.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.933][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.940][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:13.941][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:13.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.943][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.945][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:13.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:13.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:13.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:13.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.960][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:13.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:13.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.963][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.970][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:13.971][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:13.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.973][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.975][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:13.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:13.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.980][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:13.981][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:13.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:13.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.990][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:13.991][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:13.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:13.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:13.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:13.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:13.999][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:14.001][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:14.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.003][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:14.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:14.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:14.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.024][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:14.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:14.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.067][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:14.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:14.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:14.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:14.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.135][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.138][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.145][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.146][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.155][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.156][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.165][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.166][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.175][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.176][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.185][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.186][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.195][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:14.196][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:14.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.198][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.200][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:14.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:14.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.205][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:14.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:14.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.208][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:14.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:14.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:14.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:14.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.220][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:14.226][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:14.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:14.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:14.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.234][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:14.236][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:14.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.238][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.239][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:14.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.244][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:14.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:14.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:14.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.254][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:14.255][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:14.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:14.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.264][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:14.265][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:14.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:14.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:14.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.282][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:14.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:14.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.296][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:14.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.326][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:14.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.340][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:14.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:14.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:14.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:14.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:14.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:14.436][self$createEntryFromContent] Accession numbers: 172407489, 172407483, 172407245.
biodb.DEBUG[2024-11-09 16:06:14.437][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:14.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.463][private$selectFields]
biodb.TRACE[2024-11-09 16:06:14.464][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:14.465][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:14.467][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.468][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.471][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.478][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.484][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:14.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.500][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407489].
biodb.DEBUG[2024-11-09 16:06:14.501][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.526][private$selectFields]
biodb.TRACE[2024-11-09 16:06:14.527][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:14.528][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:14.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.535][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.536][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.538][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.540][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.541][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.543][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.547][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:14.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407483].
biodb.DEBUG[2024-11-09 16:06:14.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.587][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.588][private$selectFields]
biodb.TRACE[2024-11-09 16:06:14.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:14.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:14.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.597][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.598][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.602][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.603][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.609][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407245].
biodb.DEBUG[2024-11-09 16:06:14.626][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:14.627][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:14.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:14.673][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:14.676][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:14.685][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-11-09 16:06:14.687][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:14.689][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-11-09 16:06:14.691][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:14.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.718][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.719][private$selectFields]
biodb.TRACE[2024-11-09 16:06:14.720][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:14.721][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:14.722][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.727][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.728][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.730][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.733][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.734][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.736][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.737][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.739][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.740][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.756][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406857].
biodb.DEBUG[2024-11-09 16:06:14.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.781][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.782][private$selectFields]
biodb.TRACE[2024-11-09 16:06:14.783][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:14.784][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:14.786][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.788][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.790][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.792][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.793][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.795][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.796][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.798][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:14.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.819][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406766].
biodb.DEBUG[2024-11-09 16:06:14.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.845][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.846][private$selectFields]
biodb.TRACE[2024-11-09 16:06:14.847][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:14.848][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:14.849][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.857][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.860][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.861][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.866][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.867][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:14.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406074].
biodb.DEBUG[2024-11-09 16:06:14.884][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:14.885][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:14.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:14.907][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:14.910][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:14.912][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-11-09 16:06:14.914][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:14.916][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-11-09 16:06:14.918][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:14.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.943][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.945][private$selectFields]
biodb.TRACE[2024-11-09 16:06:14.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:14.947][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:14.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.949][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.950][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.953][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.954][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.959][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.960][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:14.961][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.962][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.966][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:14.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:14.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406933].
biodb.DEBUG[2024-11-09 16:06:14.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:14.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:14.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:14.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:14.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:14.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:14.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.006][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.007][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.011][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.012][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.013][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.015][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.020][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.023][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.024][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.025][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.027][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.028][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406759].
biodb.DEBUG[2024-11-09 16:06:15.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.070][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.071][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.079][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.086][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.087][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.092][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.122][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406484].
biodb.DEBUG[2024-11-09 16:06:15.123][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:15.124][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:15.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:15.173][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:15.176][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:15.178][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-09 16:06:15.179][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:15.181][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-09 16:06:15.183][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:15.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.208][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.210][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.211][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.212][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.218][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.219][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.220][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.225][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.231][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394306].
biodb.DEBUG[2024-11-09 16:06:15.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.272][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.273][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.276][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.281][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.286][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.288][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.293][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.294][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.310][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172394297].
biodb.DEBUG[2024-11-09 16:06:15.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.335][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.336][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.337][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.340][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.341][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.342][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.346][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.347][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.352][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.356][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.357][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.373][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172393920].
biodb.DEBUG[2024-11-09 16:06:15.374][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:15.375][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:15.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:15.397][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:15.401][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:15.403][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-09 16:06:15.404][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:15.406][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-09 16:06:15.408][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:15.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.434][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.435][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.436][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.438][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.441][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.444][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.446][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.448][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.449][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.450][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.451][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.453][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.455][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.456][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.457][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172405768].
biodb.DEBUG[2024-11-09 16:06:15.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.497][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.498][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.499][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.500][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.501][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.504][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.508][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.511][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.513][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.515][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.518][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.519][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172404673].
biodb.DEBUG[2024-11-09 16:06:15.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.569][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.578][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.579][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.584][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.585][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.589][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.591][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:15.607][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:15.609][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:15.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:15.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:15.662][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:15.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-11-09 16:06:15.666][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:15.670][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-11-09 16:06:15.673][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:15.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.711][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.712][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.713][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.719][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.724][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.726][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.727][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.728][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.729][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.733][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407421].
biodb.DEBUG[2024-11-09 16:06:15.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.767][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.777][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.778][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.781][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.786][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.792][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.793][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.796][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.799][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.817][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407233].
biodb.DEBUG[2024-11-09 16:06:15.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.844][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.845][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.846][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.847][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.849][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.850][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.851][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.860][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.862][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.867][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.868][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.885][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406314].
biodb.DEBUG[2024-11-09 16:06:15.886][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:15.887][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:15.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:15.910][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:15.914][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:15.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-11-09 16:06:15.917][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:15.920][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-11-09 16:06:15.923][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:15.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:15.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:15.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:15.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:15.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:15.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:15.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:15.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.952][private$selectFields]
biodb.TRACE[2024-11-09 16:06:15.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:15.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:15.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.966][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.967][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.968][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:15.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.975][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:15.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:15.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:15.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407489].
biodb.DEBUG[2024-11-09 16:06:16.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:16.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:16.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:16.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:16.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:16.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:16.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:16.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.027][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:16.028][private$selectFields]
biodb.TRACE[2024-11-09 16:06:16.029][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:16.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:16.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:16.033][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.034][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.037][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.042][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:16.044][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:16.045][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.050][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.051][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:16.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407483].
biodb.DEBUG[2024-11-09 16:06:16.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:16.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:16.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:16.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:16.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:16.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:16.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:16.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.094][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:16.095][private$selectFields]
biodb.TRACE[2024-11-09 16:06:16.097][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:16.098][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:16.099][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:16.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.105][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.113][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:16.114][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:16.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.120][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:16.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407245].
biodb.DEBUG[2024-11-09 16:06:16.138][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:16.139][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:16.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:16.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:16.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:16.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:16.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:16.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:16.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:16.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:16.234][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:16.238][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:16.239][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:16.241][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:16.314][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:16.316][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:16.317][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:16.319][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:16.368][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:16.371][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-11-09 16:06:16.377][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-11-09 16:06:16.381][private$loadEntries] Creating entries from ids [2]: "172406567, 172406564".
biodb.DEBUG[2024-11-09 16:06:16.382][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-11-09 16:06:16.384][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172406567, 172406564".
biodb.TRACE[2024-11-09 16:06:16.385][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-11-09 16:06:16.387][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:06:16.388][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:16.389][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:16.391][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:06:16.392][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:06:16.393][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-11-09 16:06:16.395][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406567,172406564/XML".
biodb.DEBUG[2024-11-09 16:06:16.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:16.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:16.400][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406567,172406564/XML".
biodb.TRACE[2024-11-09 16:06:16.488][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172406567,172406564/XML).
biodb.TRACE[2024-11-09 16:06:16.607][private$doSaveContentToFile] Saving to cache [2]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406567.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406564.xml"
biodb.DEBUG[2024-11-09 16:06:16.611][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:06:16.613][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-11-09 16:06:16.614][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:16.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:16.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:16.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:16.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:16.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:16.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:16.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:16.634][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:16.635][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:16.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.637][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:16.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.643][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.645][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.653][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.655][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.663][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.665][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.667][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.673][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.674][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.683][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.684][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.693][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:16.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.696][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.698][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:16.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.703][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:16.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:16.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:16.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:16.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:16.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:16.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.722][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:16.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:16.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.726][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:16.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:16.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.732][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:16.733][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:16.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.736][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.737][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:16.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.742][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:16.750][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:16.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:16.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:16.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.763][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:16.764][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:16.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.766][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:16.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:16.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.773][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:16.774][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:16.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.777][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:16.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:16.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.783][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:16.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.808][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.813][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:16.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.827][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:16.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.842][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:16.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:16.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:16.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:16.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:16.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:16.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:16.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:16.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:16.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:16.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:16.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:16.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:16.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:16.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:16.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:16.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:16.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:16.911][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:16.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:16.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.914][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:16.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:16.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.921][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.922][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:16.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.931][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.932][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.934][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:16.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.941][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.942][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.944][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:16.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.951][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.952][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.954][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:16.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.961][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.962][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.964][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:16.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.971][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:16.972][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.976][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:16.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:16.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.981][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:16.982][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:16.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.984][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:16.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:16.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:16.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:16.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.994][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:16.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:16.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:16.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.000][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:17.002][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:17.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.004][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:17.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:17.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.010][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:17.011][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:17.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.015][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:17.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:17.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.020][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:17.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:17.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.023][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.030][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:17.031][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:17.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.040][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:17.041][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:17.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:17.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:17.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.049][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:17.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.064][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:17.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.078][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:17.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.092][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:17.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.106][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:17.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:17.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:17.197][self$createEntryFromContent] Accession numbers: 172406567, 172406564.
biodb.DEBUG[2024-11-09 16:06:17.198][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:17.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:17.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:17.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:17.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:17.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:17.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:17.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:17.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.225][private$selectFields]
biodb.TRACE[2024-11-09 16:06:17.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:17.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:17.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.233][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.237][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.239][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.240][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.241][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.245][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.246][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:17.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406766].
biodb.DEBUG[2024-11-09 16:06:17.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:17.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:17.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:17.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:17.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:17.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:17.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:17.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.288][private$selectFields]
biodb.TRACE[2024-11-09 16:06:17.289][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:17.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:17.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.297][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.299][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.303][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.309][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:17.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406567].
biodb.DEBUG[2024-11-09 16:06:17.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:17.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:17.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:17.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:17.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:17.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:17.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.350][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.351][private$selectFields]
biodb.TRACE[2024-11-09 16:06:17.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:17.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:17.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.361][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.365][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.367][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:17.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.371][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.372][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:17.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:17.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406564].
biodb.DEBUG[2024-11-09 16:06:17.389][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:17.391][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:17.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:17.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:17.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:17.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:17.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:17.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:17.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:17.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:17.416][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:17.417][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:17.419][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:17.496][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:17.497][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:17.499][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:17.500][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:17.614][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:17.618][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-11-09 16:06:17.624][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-11-09 16:06:17.627][private$loadEntries] Creating entries from ids [3]: "172407227, 172406808, 172406805".
biodb.DEBUG[2024-11-09 16:06:17.628][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-11-09 16:06:17.630][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172407227, 172406808, 172406805".
biodb.TRACE[2024-11-09 16:06:17.632][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-11-09 16:06:17.633][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-11-09 16:06:17.635][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:17.636][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:17.637][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-11-09 16:06:17.638][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-11-09 16:06:17.639][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-11-09 16:06:17.642][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407227,172406808,172406805/XML".
biodb.DEBUG[2024-11-09 16:06:17.644][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:17.645][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:17.647][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407227,172406808,172406805/XML".
biodb.TRACE[2024-11-09 16:06:17.755][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172407227,172406808,172406805/XML).
biodb.TRACE[2024-11-09 16:06:17.883][private$doSaveContentToFile] Saving to cache [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172407227.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406808.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172406805.xml"
biodb.DEBUG[2024-11-09 16:06:17.888][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-11-09 16:06:17.889][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-11-09 16:06:17.891][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-11-09 16:06:17.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:17.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:17.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:17.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:17.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:17.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:17.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:17.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.910][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:17.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:17.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.918][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.920][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.928][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.929][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.932][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:17.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.938][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.939][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.948][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.949][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:17.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.958][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.959][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:17.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.968][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:17.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:17.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.973][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:17.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:17.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.978][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:17.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:17.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.981][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:17.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:17.995][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:17.999][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:18.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:18.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:18.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.008][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.012][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.019][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:18.020][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:18.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.022][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.024][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:18.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:18.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.029][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:18.031][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:18.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.033][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:18.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:18.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.040][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.041][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.050][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.051][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.060][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.074][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:18.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.089][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:18.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.118][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:18.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:18.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:18.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:18.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:18.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:18.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:18.181][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:18.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:18.183][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:18.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:18.187][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.188][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.191][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.197][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.198][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.207][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.208][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.211][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.217][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.218][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.227][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.228][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.237][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.238][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.247][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:18.248][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:18.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.250][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.252][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:18.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.257][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:18.258][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:18.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.260][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.262][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:18.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:18.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.267][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:18.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:18.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:18.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:18.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.277][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.278][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.287][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:18.288][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:18.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.292][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:18.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.297][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:18.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:18.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:18.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:18.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.307][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.308][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.317][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.318][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.320][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.326][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:18.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.341][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:18.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.355][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:18.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.370][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:18.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.384][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:18.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:18.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:18.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:18.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:18.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:18.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:18.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:18.463][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.473][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.474][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.483][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.484][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.493][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.494][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.496][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.503][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.504][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.506][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.513][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.514][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.516][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.523][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:18.524][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:18.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.528][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-11-09 16:06:18.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:18.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.533][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:18.534][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:18.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:18.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:18.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:18.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:18.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.546][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.548][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.552][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.554][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:18.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.562][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:18.564][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:18.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.566][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.567][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:18.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:18.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.572][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:18.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:18.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.576][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-11-09 16:06:18.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:18.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.582][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.584][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.592][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.594][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:18.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-11-09 16:06:18.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:18.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.617][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-11-09 16:06:18.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:18.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.632][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-11-09 16:06:18.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:18.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.646][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-11-09 16:06:18.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:18.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-11-09 16:06:18.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:18.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.675][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:18.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:18.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:18.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:18.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:18.756][self$createEntryFromContent] Accession numbers: 172407227, 172406808, 172406805.
biodb.DEBUG[2024-11-09 16:06:18.757][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:18.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:18.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:18.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:18.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:18.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:18.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:18.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.783][private$selectFields]
biodb.TRACE[2024-11-09 16:06:18.784][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:18.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:18.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.791][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.796][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.797][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.800][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.801][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.804][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:18.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.824][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407227].
biodb.DEBUG[2024-11-09 16:06:18.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:18.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:18.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:18.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:18.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:18.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:18.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:18.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.854][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.855][private$selectFields]
biodb.TRACE[2024-11-09 16:06:18.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:18.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:18.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.861][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.868][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.870][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.871][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.872][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.875][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.877][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:18.878][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.883][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406808].
biodb.DEBUG[2024-11-09 16:06:18.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:18.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:18.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:18.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:18.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:18.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:18.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:18.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.917][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.918][private$selectFields]
biodb.TRACE[2024-11-09 16:06:18.920][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:18.921][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:18.922][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.931][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.933][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.934][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:18.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.938][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.940][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:18.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:18.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:18.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:18.956][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406805].
biodb.DEBUG[2024-11-09 16:06:18.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:18.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:18.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:18.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:18.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:18.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:18.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:18.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:18.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:19.006][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:19.009][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:19.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-09 16:06:19.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:19.014][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-09 16:06:19.017][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:19.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.042][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.043][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.044][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.045][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.046][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.052][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.056][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.057][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.058][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.060][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.064][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.080][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-09 16:06:19.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.082][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.104][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.105][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.109][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.114][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.115][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.118][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.121][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.123][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.126][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389755].
biodb.DEBUG[2024-11-09 16:06:19.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.167][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.168][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.169][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.170][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.171][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.172][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.174][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.177][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.178][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.181][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.183][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.184][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.185][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.189][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.195][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389592].
biodb.DEBUG[2024-11-09 16:06:19.206][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:19.207][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:19.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:19.237][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:19.241][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:19.242][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-09 16:06:19.244][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:19.246][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-09 16:06:19.249][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:19.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.276][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.279][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.289][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.291][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.297][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172399902].
biodb.DEBUG[2024-11-09 16:06:19.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.339][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.340][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.341][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.342][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.344][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.345][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.354][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.355][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.360][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:19.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.402][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.403][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.404][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.405][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.414][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.416][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.417][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.422][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.423][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172354789].
biodb.DEBUG[2024-11-09 16:06:19.440][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:19.441][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:19.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.480][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:19.488][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:19.491][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:19.493][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:19.495][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:19.581][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:19.583][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:19.584][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:19.586][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:19.636][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:19.639][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-11-09 16:06:19.645][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-11-09 16:06:19.648][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:19.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.674][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.675][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.676][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.677][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.680][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.688][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.689][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.690][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.692][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.693][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.696][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407421].
biodb.DEBUG[2024-11-09 16:06:19.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.737][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.738][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.740][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.741][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.747][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.748][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.749][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.751][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.754][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.755][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.756][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.758][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.760][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.770][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.776][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407233].
biodb.DEBUG[2024-11-09 16:06:19.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:19.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.810][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.812][private$selectFields]
biodb.TRACE[2024-11-09 16:06:19.813][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:19.814][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:19.815][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.816][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.818][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.820][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.821][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.822][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.827][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:19.828][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.832][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.833][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:19.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:19.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:19.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:19.849][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406314].
biodb.DEBUG[2024-11-09 16:06:19.851][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:19.852][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:19.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:19.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:19.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:19.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:19.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:19.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:19.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:19.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:19.877][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-11-09 16:06:19.878][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-11-09 16:06:19.880][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-11-09 16:06:19.952][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-11-09 16:06:19.954][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-11-09 16:06:19.956][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-11-09 16:06:19.957][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-11-09 16:06:20.111][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-11-09 16:06:20.114][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-11-09 16:06:20.119][private$doSaveContentToFile] Saving to cache [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-11-09 16:06:20.122][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:20.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.149][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.157][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.164][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.170][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.186][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407489].
biodb.DEBUG[2024-11-09 16:06:20.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.212][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.213][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.214][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.217][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.220][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.227][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.233][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.249][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407483].
biodb.DEBUG[2024-11-09 16:06:20.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.275][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.276][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.277][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.279][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.280][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.283][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.285][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.286][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.288][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.289][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.291][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.297][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407245].
biodb.DEBUG[2024-11-09 16:06:20.314][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:20.315][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:20.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:20.362][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:20.366][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:20.367][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-11-09 16:06:20.369][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:20.371][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-11-09 16:06:20.374][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:20.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.399][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.400][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.403][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.406][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.413][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.415][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.420][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.421][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406766].
biodb.DEBUG[2024-11-09 16:06:20.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.473][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.474][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.476][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.477][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.478][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.484][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.488][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.490][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.493][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.496][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406567].
biodb.DEBUG[2024-11-09 16:06:20.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.525][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.539][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.543][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.544][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.545][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.547][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.549][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.550][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.553][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.555][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.559][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.561][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.577][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406564].
biodb.DEBUG[2024-11-09 16:06:20.578][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:20.579][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:20.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.583][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:20.601][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:20.605][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:20.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-11-09 16:06:20.608][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:20.610][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-11-09 16:06:20.612][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:20.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.616][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.638][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.640][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.648][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.655][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.661][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.677][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407227].
biodb.DEBUG[2024-11-09 16:06:20.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.703][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.707][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.712][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.717][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.719][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.725][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.741][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406808].
biodb.DEBUG[2024-11-09 16:06:20.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.767][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.768][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.780][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.781][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.782][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.785][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.787][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.788][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.805][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406805].
biodb.DEBUG[2024-11-09 16:06:20.806][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:20.807][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:20.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:20.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:20.865][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:20.867][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-09 16:06:20.868][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:20.871][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-09 16:06:20.873][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:20.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.876][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.901][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.911][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.916][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.917][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.918][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.923][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.924][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.940][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172391226].
biodb.DEBUG[2024-11-09 16:06:20.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:20.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:20.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:20.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:20.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:20.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:20.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:20.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.966][private$selectFields]
biodb.TRACE[2024-11-09 16:06:20.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:20.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:20.970][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.975][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.980][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.982][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:20.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.987][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.988][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:20.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:20.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:20.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:20.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.004][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389755].
biodb.DEBUG[2024-11-09 16:06:21.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.030][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.034][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.043][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.046][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.047][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.048][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.052][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172389592].
biodb.DEBUG[2024-11-09 16:06:21.069][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:21.070][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:21.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:21.092][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:21.096][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:21.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-09 16:06:21.099][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:21.101][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-09 16:06:21.103][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:21.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.128][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.130][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.131][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.132][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.133][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.134][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.138][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.143][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.145][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.147][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.150][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.151][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172399902].
biodb.DEBUG[2024-11-09 16:06:21.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.178][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.193][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.194][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.195][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.196][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.202][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.208][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.209][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.211][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.212][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.214][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.215][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.231][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172392942].
biodb.DEBUG[2024-11-09 16:06:21.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.257][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.258][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.259][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.260][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.261][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.262][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.266][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.279][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.282][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.287][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.288][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172354789].
biodb.DEBUG[2024-11-09 16:06:21.306][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:21.307][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:21.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:21.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:21.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:21.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-11-09 16:06:21.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:21.365][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-11-09 16:06:21.367][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:21.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.394][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.398][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.399][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.400][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.403][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.404][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.405][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.407][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.409][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.410][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.416][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.432][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407421].
biodb.DEBUG[2024-11-09 16:06:21.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.458][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.463][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.464][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.466][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.467][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.471][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.473][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.476][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.478][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.479][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407233].
biodb.DEBUG[2024-11-09 16:06:21.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.522][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.530][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.535][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.537][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.538][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.542][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.543][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172406314].
biodb.DEBUG[2024-11-09 16:06:21.560][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:21.561][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:21.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:21.583][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:21.587][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:21.589][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-11-09 16:06:21.591][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:21.595][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-11-09 16:06:21.597][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:21.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.624][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.625][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.627][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.629][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.630][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.631][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.641][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.645][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.647][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407489].
biodb.DEBUG[2024-11-09 16:06:21.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.675][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.687][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.689][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.692][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.693][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.695][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.697][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.710][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.713][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.718][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.719][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.735][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407483].
biodb.DEBUG[2024-11-09 16:06:21.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.761][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.762][private$selectFields]
biodb.TRACE[2024-11-09 16:06:21.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:21.765][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:21.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.768][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.778][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-11-09 16:06:21.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.782][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.783][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-11-09 16:06:21.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:21.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.800][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172407245].
biodb.DEBUG[2024-11-09 16:06:21.801][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:21.802][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:21.827][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:21.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:21.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.833][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:21.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:21.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:06:21.843][biodb::testThat]
biodb.INFO [2024-11-09 16:06:21.844][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-11-09 16:06:21.845][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:21.847][biodb::testThat]
biodb.TRACE[2024-11-09 16:06:21.850][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:06:21.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:06:21.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.855][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-11-09 16:06:21.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-11-09 16:06:21.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:21.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:21.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:21.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:21.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:21.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-09 16:06:21.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:21.931][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-09 16:06:21.933][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:21.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:21.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:21.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:21.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:21.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:21.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:21.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:21.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:21.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:21.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:21.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:21.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:21.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:21.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:21.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:21.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.968][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:21.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:21.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:21.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:21.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:21.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:21.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:21.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:21.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:21.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:21.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:21.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:21.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:21.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:21.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:21.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:21.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.020][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.025][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.034][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.039][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.068][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.082][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.101][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:22.103][private$selectFields]
biodb.TRACE[2024-11-09 16:06:22.104][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:22.105][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:22.106][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:22.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.109][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.111][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.112][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.113][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.125][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.126][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.129][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.130][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.132][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.134][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.135][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.136][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.140][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.141][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.156][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.158][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.159][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.161][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.163][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.164][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.168][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.174][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.175][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.179][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.180][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.182][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.184][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.185][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.188][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.189][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.193][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.196][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.198][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.199][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.202][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.204][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.207][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.208][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.211][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.213][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.217][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.218][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.220][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.221][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.226][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.231][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.232][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.235][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.236][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.237][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.241][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.242][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.244][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.245][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.247][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.250][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.254][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.259][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.260][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.261][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.263][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.265][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.266][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.269][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:22.271][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:22.272][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.273][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.277][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.278][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.281][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.283][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.286][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.287][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.291][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.292][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.296][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.297][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.299][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.300][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.309][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.310][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.311][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.315][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.316][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.318][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.319][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.321][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.323][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.328][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.329][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.332][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.335][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.338][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.339][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.342][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.343][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.344][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.348][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:22.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.481][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.486][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.491][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.506][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.534][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.544][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.584][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.602][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172394306, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, 4-(3-imidazo[1,5-a]pyrazinyl)morpholine, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, ...].
biodb.DEBUG[2024-11-09 16:06:22.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:22.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:22.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:22.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:22.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:22.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:22.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.649][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.678][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.708][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.770][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.775][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:22.776][private$selectFields]
biodb.TRACE[2024-11-09 16:06:22.777][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:22.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:22.780][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:22.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.782][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.785][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.787][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.790][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.791][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.794][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.795][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.796][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.800][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.801][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.804][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.806][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.808][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.809][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.815][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.820][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.822][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.823][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.824][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.827][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.828][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.831][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.833][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.834][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.837][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.839][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.841][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.842][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.843][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.847][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.848][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.850][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.851][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.853][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.855][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.856][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.860][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.861][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.862][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.866][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.867][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.869][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.870][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.872][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.874][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.875][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.876][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.879][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.880][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.881][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.883][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.884][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.886][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.888][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.893][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.895][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.897][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.899][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.900][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.902][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.903][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.907][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.913][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:22.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:22.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.925][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.928][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:22.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.930][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.931][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.933][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:22.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.935][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.936][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.938][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:22.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.941][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:22.942][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:22.944][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:22.945][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:22.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.949][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.950][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:22.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.952][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.953][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.955][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:22.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.958][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.960][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:22.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.962][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.963][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.965][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:22.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.967][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.968][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.969][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:22.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.972][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.973][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:22.974][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:22.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.977][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.978][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:22.979][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:22.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.981][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.984][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:22.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.986][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.987][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:22.988][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:22.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.991][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:22.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:22.995][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:22.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.998][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:22.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.000][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.001][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.005][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.009][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.011][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.014][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.015][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.017][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.019][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.020][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:23.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.120][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.144][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.154][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.159][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.164][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.198][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.208][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.227][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172394297, 5-(4-ethylphenyl)-4-fluoro-1-methyl-pyrazole, 5-(4-ethylphenyl)-4-fluoro-1-methylpyrazole, 5-(4-ethylphenyl)-4-fluoro-1-methylpyrazole, 5-(4-ethylphenyl)-4-fluoranyl-1-methyl-pyrazole, ...].
biodb.DEBUG[2024-11-09 16:06:23.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:23.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:23.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:23.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:23.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:23.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:23.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:23.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.350][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.380][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.429][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.443][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:23.444][private$selectFields]
biodb.TRACE[2024-11-09 16:06:23.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:23.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:23.448][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:23.449][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.454][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.455][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.457][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.459][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.460][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.463][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.465][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.468][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.469][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.473][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.474][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.478][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.491][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.492][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.493][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.497][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.505][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.506][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.510][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.515][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.516][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.517][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.519][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.520][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.522][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.524][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.525][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.529][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.530][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.531][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.534][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.535][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.536][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.538][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.540][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.541][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.543][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.544][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.546][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.548][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.549][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.550][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.553][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.554][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.557][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.560][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.562][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.563][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.564][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.567][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.568][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.569][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.572][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.573][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.576][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.579][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.581][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.582][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.583][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.590][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.592][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.593][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.595][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.596][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.598][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.600][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.601][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:23.602][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:23.603][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.608][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.609][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.612][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.613][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.614][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.618][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.619][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.622][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.623][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.624][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.627][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.628][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.629][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.633][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.639][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.647][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.648][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.650][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.652][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.653][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.655][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.660][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.661][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.669][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.670][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.672][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.674][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.675][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.676][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.679][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.680][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:23.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:23.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:23.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:23.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:23.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:23.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:23.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.794][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:23.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:23.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:23.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.824][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.829][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.834][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:23.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:23.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:23.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:23.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.885][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:23.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:23.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:23.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:23.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.920][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:23.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172393920, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, 2-(3-imidazo[1,5-a]pyrazinyl)morpholine, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, ...].
biodb.DEBUG[2024-11-09 16:06:23.942][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:23.943][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:23.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:23.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:23.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:23.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:23.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:23.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:23.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:23.966][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:23.970][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:23.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-09 16:06:23.973][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:23.975][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-09 16:06:23.977][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:23.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:23.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:23.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:23.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:23.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:23.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:23.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:23.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:23.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:23.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.003][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.012][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.079][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.083][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.107][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.154][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:24.156][private$selectFields]
biodb.TRACE[2024-11-09 16:06:24.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:24.158][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:24.159][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:24.160][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.165][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.166][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.170][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.171][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.175][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.176][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.179][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.180][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.183][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.184][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.185][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.188][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.197][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.198][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.199][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.201][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.202][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.204][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.206][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.207][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.211][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.215][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.216][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.218][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.220][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.225][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.226][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.227][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.229][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.230][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.232][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.234][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.235][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.239][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.240][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.241][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.243][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.244][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.246][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.249][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.250][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.253][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.254][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.255][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.257][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.258][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.260][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.263][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.267][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.271][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.274][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.277][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.278][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.282][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.288][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.291][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.293][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.301][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.302][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.306][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.307][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.309][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.310][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:24.312][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:24.313][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.316][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.317][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.319][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.321][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.322][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.323][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.326][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.327][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.328][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.330][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.331][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.333][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.336][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.337][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.339][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.341][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.344][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.349][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.354][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.356][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.359][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.360][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.363][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.368][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.372][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.373][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.374][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.377][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.378][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.379][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.382][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.384][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.386][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.387][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:24.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.475][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.479][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.521][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.526][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.531][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.536][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172405768, 1-bromo-2,3,5,6-tetradeuterio-4-[2,2,2-trideuterio-1,1-bis(trideuteriomethyl)ethyl]benzene, 1-bromo-2,3,5,6-tetradeuterio-4-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, 1-bromo-2,3,5,6-tetradeuterio-4-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, 1-bromanyl-2,3,5,6-tetradeuterio-4-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, ...].
biodb.DEBUG[2024-11-09 16:06:24.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:24.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:24.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:24.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:24.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:24.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:24.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.714][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.733][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.738][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.742][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.794][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.804][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:24.805][private$selectFields]
biodb.TRACE[2024-11-09 16:06:24.806][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:24.807][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:24.808][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:24.810][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.811][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.813][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.814][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.816][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.818][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.819][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.820][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.822][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.824][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.825][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.827][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.828][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.830][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.832][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.833][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.834][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.838][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.841][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.842][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.843][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.846][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.850][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.851][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.853][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.855][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.856][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.860][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.861][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.862][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.865][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.869][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.870][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.871][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.874][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.875][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.876][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.879][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.881][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.883][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.884][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.885][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.888][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.889][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.890][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.892][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.919][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.920][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.923][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.924][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.925][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:24.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.928][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:24.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.933][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.934][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.935][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:24.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.938][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:24.940][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:24.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.943][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:24.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:24.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.948][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.949][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:24.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.952][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.953][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:24.954][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:24.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.958][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:24.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.961][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:24.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.966][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.967][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:24.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:24.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.974][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:24.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.977][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.978][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:24.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.980][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.982][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.983][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:24.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.985][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.986][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:24.988][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:24.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:24.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:24.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.993][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.995][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:24.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:24.997][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:24.998][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:24.999][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.003][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.004][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.006][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.008][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.009][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.012][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.014][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.017][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.018][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.025][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.031][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.032][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.036][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.045][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.054][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.056][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.059][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.060][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.064][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:25.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.196][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.278][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.283][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172404673, 1-bromo-2,3,4,6-tetradeuterio-5-[2,2,2-trideuterio-1,1-bis(trideuteriomethyl)ethyl]benzene, 1-bromo-2,3,4,6-tetradeuterio-5-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, 1-bromo-2,3,4,6-tetradeuterio-5-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, 1-bromanyl-2,3,4,6-tetradeuterio-5-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, ...].
biodb.DEBUG[2024-11-09 16:06:25.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:25.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:25.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:25.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:25.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:25.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:25.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.398][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.419][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.454][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.469][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.488][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:25.490][private$selectFields]
biodb.TRACE[2024-11-09 16:06:25.491][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:25.492][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:25.493][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:25.494][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.499][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.500][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.503][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.504][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.505][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.507][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.509][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.510][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.513][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.515][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.518][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.519][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.522][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.523][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.524][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.529][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.531][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.537][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.538][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.541][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.542][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.543][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.551][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.555][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.561][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.562][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.565][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.567][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.570][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.571][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.575][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.576][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.580][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.581][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.583][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.584][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.586][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.589][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.590][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.594][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.595][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.598][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.599][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.600][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.605][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.608][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.612][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.613][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.614][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.618][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.622][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.623][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.628][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.629][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.632][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.637][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.638][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.641][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.642][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.643][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.646][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.647][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:25.648][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:25.649][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.653][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.654][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.655][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.658][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.659][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.660][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.664][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.665][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.667][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.669][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.670][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.672][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.673][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.675][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.677][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.678][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.682][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.683][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.684][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.687][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.689][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.691][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.692][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.693][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.696][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.697][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.698][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.703][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.706][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.717][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.719][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.720][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.723][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.724][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.725][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.727][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.729][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.730][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.734][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:25.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:25.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:25.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:25.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:25.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:25.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:25.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:25.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.834][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:25.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:25.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:25.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:25.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:25.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.867][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.872][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.877][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:25.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:25.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:25.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:25.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.921][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:25.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:25.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:25.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.945][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:25.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.955][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:25.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:25.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:25.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172392942, 5'-(trifluoromethyl)spiro[cyclopropane-1,3'-indane]-1'-one, 5-(trifluoromethyl)-1-spiro[2H-indene-3,1'-cyclopropane]one, 5-(trifluoromethyl)spiro[2H-indene-3,1'-cyclopropane]-1-one, 5-(trifluoromethyl)spiro[2H-indene-3,1'-cyclopropane]-1-one, ...].
biodb.DEBUG[2024-11-09 16:06:25.977][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:25.978][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:25.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:25.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:25.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:25.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:25.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:25.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:25.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:26.006][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:26.010][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:26.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-11-09 16:06:26.013][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:26.015][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-11-09 16:06:26.017][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:26.019][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:26.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:26.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:26.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:26.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:26.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:26.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:26.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.117][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.127][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.132][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.195][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.200][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.204][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:26.206][private$selectFields]
biodb.TRACE[2024-11-09 16:06:26.207][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:26.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:26.209][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:26.210][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.214][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.215][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.216][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.219][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.220][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.221][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.223][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.224][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.226][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.228][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.229][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.230][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.233][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.234][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.235][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.237][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.239][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.240][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.242][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.243][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.247][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.253][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.254][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.259][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.261][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.265][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.267][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.268][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.276][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.277][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.281][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.282][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.286][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.287][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.289][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.290][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.292][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.295][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.296][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.299][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.300][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.301][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.304][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.306][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.309][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.311][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.314][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.315][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.317][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.319][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.325][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.333][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.334][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.337][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.339][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.347][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.348][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.350][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.356][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.357][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.361][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.362][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.365][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.367][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.370][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:26.371][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:26.372][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.374][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.377][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.378][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.382][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.383][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.385][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.386][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.388][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.391][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.392][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.394][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.396][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.397][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.399][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.400][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.404][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.413][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.414][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.415][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.418][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.419][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.422][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.428][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.431][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.436][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.437][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.439][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.441][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.442][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.443][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.447][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:26.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.587][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.592][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.602][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.684][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172394306, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, 4-(3-imidazo[1,5-a]pyrazinyl)morpholine, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, 4-imidazo[1,5-a]pyrazin-3-ylmorpholine, ...].
biodb.DEBUG[2024-11-09 16:06:26.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:26.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:26.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:26.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:26.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:26.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:26.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:26.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.769][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.783][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.787][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.797][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.801][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.839][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.853][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.862][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.867][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.872][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:26.873][private$selectFields]
biodb.TRACE[2024-11-09 16:06:26.874][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:26.875][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:26.876][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:26.878][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.881][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.882][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.883][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.886][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.887][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.895][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.898][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.900][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.901][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.903][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.904][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.906][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.908][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.909][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.910][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.913][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.914][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.915][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.917][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.919][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:26.920][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:26.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.923][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.925][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:26.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.928][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:26.929][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:26.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.932][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.933][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.934][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:26.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.937][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:26.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.941][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.942][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:26.944][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:26.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.946][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.947][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.949][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:26.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.952][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.953][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:26.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.957][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.958][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:26.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.961][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.962][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:26.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.966][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:26.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:26.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.969][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.970][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.972][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:26.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.975][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.976][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:26.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.979][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.980][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.981][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:26.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.984][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.986][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:26.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.988][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.989][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.990][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:26.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.994][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:26.995][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:26.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:26.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:26.999][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.000][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.003][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.007][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.008][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.009][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.012][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.013][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.014][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.017][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.022][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.027][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.028][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.031][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.033][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.036][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.037][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.041][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.042][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.045][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:27.047][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:27.048][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.049][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.051][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.053][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.054][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.056][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.057][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.058][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.061][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.062][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.063][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.065][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.067][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.068][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.070][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.071][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.073][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.076][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.087][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.089][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.090][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.091][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.094][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.095][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.096][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.098][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.099][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.101][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.104][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.105][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.109][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.110][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.113][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.114][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.117][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.118][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.119][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.122][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:27.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.219][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.252][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.257][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.262][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.272][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.309][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.370][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172394297, 5-(4-ethylphenyl)-4-fluoro-1-methyl-pyrazole, 5-(4-ethylphenyl)-4-fluoro-1-methylpyrazole, 5-(4-ethylphenyl)-4-fluoro-1-methylpyrazole, 5-(4-ethylphenyl)-4-fluoranyl-1-methyl-pyrazole, ...].
biodb.DEBUG[2024-11-09 16:06:27.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:27.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:27.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:27.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:27.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:27.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:27.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:27.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.467][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.476][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.504][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.547][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:27.548][private$selectFields]
biodb.TRACE[2024-11-09 16:06:27.549][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:27.550][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:27.551][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:27.552][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.553][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.557][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.558][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.560][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.562][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.563][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.566][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.567][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.571][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.572][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.575][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.577][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.580][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.581][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.584][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.588][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.589][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.591][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.594][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.595][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.602][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.604][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.607][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.608][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.609][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.611][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.614][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.616][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.617][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.618][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.621][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.623][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.624][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.626][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.627][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.629][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.631][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.632][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.637][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.638][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.641][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.643][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.645][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.646][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.647][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.651][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.652][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.655][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.656][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.660][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.663][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.664][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.677][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.682][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.683][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.686][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.687][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.688][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.691][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.695][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.696][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.698][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.700][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.701][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.705][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.706][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.707][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.710][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.711][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.712][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.715][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.716][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.717][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:27.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.719][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.721][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:27.722][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:27.723][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.727][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.728][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.729][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.733][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.734][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.736][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.737][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.739][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.741][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.742][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.743][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.745][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.747][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.748][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.750][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.751][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.753][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.755][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.757][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.760][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.761][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.762][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.764][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.765][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.767][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.769][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.770][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.771][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.774][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.776][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.779][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.780][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.783][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.784][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.788][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.789][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.790][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:27.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.792][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.794][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.795][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:27.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.797][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.798][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:27.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:27.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:27.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:27.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:27.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:27.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.886][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.901][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:27.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:27.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.934][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.939][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:27.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:27.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:27.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:27.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:27.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:27.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:27.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:27.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:27.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.006][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.010][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.015][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172393920, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, 2-(3-imidazo[1,5-a]pyrazinyl)morpholine, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, 2-imidazo[1,5-a]pyrazin-3-ylmorpholine, ...].
biodb.DEBUG[2024-11-09 16:06:28.037][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:28.038][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:28.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:28.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:28.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:28.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:28.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:28.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:28.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:28.069][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:28.072][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:28.074][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-11-09 16:06:28.076][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:28.078][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-11-09 16:06:28.080][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:28.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:28.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:28.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:28.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:28.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:28.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:28.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:28.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.182][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.187][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.211][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.234][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.248][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.258][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:28.259][private$selectFields]
biodb.TRACE[2024-11-09 16:06:28.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:28.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:28.262][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:28.264][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.267][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.268][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.270][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.272][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.273][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.274][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.278][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.279][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.281][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.282][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.283][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.286][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.287][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.288][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.291][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.301][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.302][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.305][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.307][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.309][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.310][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.315][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.316][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.318][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.319][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.323][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.324][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.325][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.328][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.330][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.332][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.333][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.334][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.337][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.338][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.339][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.342][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.346][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.347][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.348][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.350][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.352][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.353][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.356][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.358][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.360][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.361][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.362][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.367][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.369][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.370][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.374][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.375][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.378][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.379][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.381][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.383][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.384][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.385][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.388][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.389][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.390][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.392][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.393][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.395][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.397][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.398][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.401][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.403][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.404][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.406][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.407][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.408][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.411][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.412][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.413][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.416][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.418][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.420][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.421][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:28.422][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:28.423][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.425][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.428][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.429][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.433][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.434][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.436][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.437][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.439][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.441][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.442][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.443][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.445][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.454][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.456][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.459][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.460][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.464][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.468][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.470][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.471][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.473][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.474][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.476][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.478][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.479][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.480][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.483][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.486][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.488][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.489][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.490][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.492][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.495][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.497][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.498][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.500][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.503][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.504][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.507][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.508][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:28.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.524][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.596][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.615][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.640][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.645][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.650][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.664][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.747][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172405768, 1-bromo-2,3,5,6-tetradeuterio-4-[2,2,2-trideuterio-1,1-bis(trideuteriomethyl)ethyl]benzene, 1-bromo-2,3,5,6-tetradeuterio-4-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, 1-bromo-2,3,5,6-tetradeuterio-4-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, 1-bromanyl-2,3,5,6-tetradeuterio-4-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, ...].
biodb.DEBUG[2024-11-09 16:06:28.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:28.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:28.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:28.758][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:28.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:28.760][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:28.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:28.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.855][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.860][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:28.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:28.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:28.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.927][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:28.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.932][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:28.933][private$selectFields]
biodb.TRACE[2024-11-09 16:06:28.934][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:28.935][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:28.937][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:28.938][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:28.939][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:28.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.941][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.943][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.944][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:28.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.946][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.947][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:28.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.951][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.952][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.953][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:28.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.957][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.958][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:28.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.961][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.963][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:28.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.965][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.966][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:28.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:28.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.969][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:28.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:28.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.976][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:28.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.979][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.980][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:28.981][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:28.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.984][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.986][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:28.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.988][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:28.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.994][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:28.995][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:28.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:28.997][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:28.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.003][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.004][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.007][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.008][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.009][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.012][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.014][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.022][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.023][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.025][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.026][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.028][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.031][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.032][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.036][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.037][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.040][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.042][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.045][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.051][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.054][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.056][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.059][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.060][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.062][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.067][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.073][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.074][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.076][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.081][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.082][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.083][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.087][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.088][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.090][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.091][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.093][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.096][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:29.097][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:29.098][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.102][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.103][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.104][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.108][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.109][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.111][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.112][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.114][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.116][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.117][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.118][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.122][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.123][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.126][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.131][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.132][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.134][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.136][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.137][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.139][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.140][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.141][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.145][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.148][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.153][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.154][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.157][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.162][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.163][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.164][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.167][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.168][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.169][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.171][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.173][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:29.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.269][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.317][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.322][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.366][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.422][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172404673, 1-bromo-2,3,4,6-tetradeuterio-5-[2,2,2-trideuterio-1,1-bis(trideuteriomethyl)ethyl]benzene, 1-bromo-2,3,4,6-tetradeuterio-5-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, 1-bromo-2,3,4,6-tetradeuterio-5-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, 1-bromanyl-2,3,4,6-tetradeuterio-5-[1,1,1,3,3,3-hexadeuterio-2-(trideuteriomethyl)propan-2-yl]benzene, ...].
biodb.DEBUG[2024-11-09 16:06:29.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:29.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:29.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:29.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:29.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:29.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:29.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:29.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.521][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.526][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.549][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.554][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.568][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.587][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.596][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:29.597][private$selectFields]
biodb.TRACE[2024-11-09 16:06:29.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:29.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:29.601][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:29.602][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.607][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.608][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.611][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.620][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.626][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.627][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.631][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.632][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.636][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.637][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.639][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.641][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.644][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.645][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.647][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.649][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.650][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.651][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.654][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.655][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.656][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.659][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.660][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.664][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.668][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.670][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.671][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.673][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.678][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.679][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.681][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.683][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.684][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.685][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.687][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.689][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.690][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.692][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.693][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.697][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.698][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.699][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.701][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.703][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.704][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.707][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.708][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.711][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.712][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.713][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.717][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.718][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.721][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.723][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.725][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.726][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.727][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.734][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.736][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.737][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.739][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.740][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.741][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.745][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.746][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.748][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.753][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.758][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.759][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.760][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.762][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.763][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.765][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.767][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.768][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.769][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:29.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.772][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.773][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:29.774][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:29.775][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.776][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.779][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.780][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.781][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.785][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.786][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.788][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.789][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.791][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.794][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.795][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.799][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.800][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.802][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.803][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.807][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.808][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.809][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.812][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.813][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.814][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.816][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.817][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.819][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.821][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.822][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.823][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.825][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:29.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.830][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.831][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:29.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:29.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.836][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.837][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:29.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.839][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.840][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.842][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:29.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.844][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.845][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.846][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:29.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.848][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.850][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:29.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:29.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:29.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:29.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:29.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.937][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:29.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:29.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:29.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:29.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.989][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:29.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:29.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.056][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.071][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.076][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.097][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172392942, 5'-(trifluoromethyl)spiro[cyclopropane-1,3'-indane]-1'-one, 5-(trifluoromethyl)-1-spiro[2H-indene-3,1'-cyclopropane]one, 5-(trifluoromethyl)spiro[2H-indene-3,1'-cyclopropane]-1-one, 5-(trifluoromethyl)spiro[2H-indene-3,1'-cyclopropane]-1-one, ...].
biodb.DEBUG[2024-11-09 16:06:30.099][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:30.100][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:30.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:30.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:30.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:30.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:30.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:30.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:30.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:30.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:30.167][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:30.170][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:30.172][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-09 16:06:30.173][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:30.175][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-09 16:06:30.177][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:30.179][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:30.180][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:30.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:30.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:30.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:30.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:30.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.254][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.278][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.330][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.339][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.344][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:30.345][private$selectFields]
biodb.TRACE[2024-11-09 16:06:30.346][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:30.347][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:30.349][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:30.350][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.353][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.354][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.356][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.358][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.359][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.360][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.362][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.364][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.365][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.367][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.368][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.370][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.372][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.373][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.374][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.376][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.378][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.381][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.382][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.383][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.386][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.387][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.388][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.390][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.391][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.400][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.403][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.404][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.408][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.413][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.414][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.415][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.418][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.422][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.424][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.425][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.427][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.428][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.430][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.432][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.433][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.437][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.438][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.439][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.442][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.443][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.444][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.446][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.448][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.449][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.451][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.452][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.454][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.457][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.458][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.461][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.462][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.466][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.467][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.471][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.472][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.474][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.475][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.477][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.479][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.480][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.481][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.484][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.488][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.489][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.493][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.496][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.499][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.500][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.502][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.504][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.505][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.507][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.508][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:30.510][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:30.511][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.514][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.515][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.517][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.519][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.520][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.521][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.523][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.525][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.526][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.529][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.530][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.534][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.535][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.537][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.538][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.540][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.542][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.543][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.544][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.547][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.548][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.549][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.551][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.552][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.554][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.557][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.558][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.561][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.562][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.565][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.566][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.568][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.570][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.575][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.576][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.577][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.579][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.581][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.582][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.584][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.585][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.686][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.700][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.720][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.724][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.729][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.768][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172391226, 1-(2-ethoxyethyl)-3-methyl-pyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methylpyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methylpyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methyl-pyrrolo[3,2-c]pyridine, ...].
biodb.DEBUG[2024-11-09 16:06:30.840][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:30.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:30.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:30.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:30.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:30.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:30.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:30.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:30.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:30.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:30.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:30.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.911][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:30.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.940][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.944][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:30.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:30.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:30.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:30.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:30.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:30.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.992][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:30.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:30.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.007][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:31.008][private$selectFields]
biodb.TRACE[2024-11-09 16:06:31.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:31.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:31.011][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:31.012][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.014][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.017][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.018][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.022][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.023][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.025][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.026][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.028][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.031][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.032][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.036][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.037][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.040][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.042][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.045][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.046][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.050][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.054][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.056][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.059][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.061][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.065][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.074][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.076][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.080][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.087][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.089][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.091][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.097][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.098][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.102][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.104][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.110][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.111][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.113][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.117][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.119][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.121][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.125][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.126][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.128][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.132][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.134][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.136][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.141][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.143][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.149][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.154][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.156][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.157][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.162][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.165][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.166][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.167][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.170][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.174][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.180][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.181][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.183][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.184][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.185][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.189][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.190][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.194][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.195][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.197][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.198][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:31.199][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:31.201][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.204][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.205][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.207][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.209][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.210][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.219][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.222][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.223][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.225][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.227][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.228][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.229][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.232][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.233][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.234][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.236][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.238][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.241][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.244][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.246][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.247][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.251][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.252][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.253][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.256][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.261][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.262][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.263][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.266][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.267][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.268][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.270][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.272][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.275][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.276][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.278][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.280][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.281][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.282][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.284][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.286][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:31.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.419][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.424][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.428][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172389755, 8,8-difluoro-3-isopropyl-bicyclo[3.2.1]octan-2-ol, 8,8-difluoro-3-propan-2-yl-2-bicyclo[3.2.1]octanol, 8,8-difluoro-3-propan-2-ylbicyclo[3.2.1]octan-2-ol, 8,8-bis(fluoranyl)-3-propan-2-yl-bicyclo[3.2.1]octan-2-ol, ...].
biodb.DEBUG[2024-11-09 16:06:31.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:31.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:31.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:31.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:31.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:31.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:31.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:31.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.643][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.706][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:31.707][private$selectFields]
biodb.TRACE[2024-11-09 16:06:31.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:31.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:31.711][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:31.712][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.716][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.717][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.718][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.722][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.723][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.725][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.726][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.728][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.731][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.733][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.738][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.739][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.741][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.743][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.744][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.746][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.747][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.751][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.752][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.753][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.757][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.758][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.760][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.761][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.763][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.765][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.766][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.767][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.771][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.772][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.774][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.776][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.779][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.780][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.782][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.785][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.786][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.790][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.795][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.796][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.799][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.801][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.804][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.805][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.808][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.809][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.810][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.812][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.813][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.815][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.818][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.822][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.827][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.831][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.832][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.833][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.836][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.837][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.840][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.841][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.843][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.846][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.850][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.851][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.852][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.855][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.857][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.860][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.861][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.865][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:31.866][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:31.867][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.871][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.872][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.873][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.875][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.877][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.878][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.880][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.881][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.882][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.885][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.886][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.887][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:31.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.889][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.891][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.892][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:31.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.894][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.895][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:31.896][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:31.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.899][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.900][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:31.901][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:31.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.903][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.906][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:31.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.908][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.909][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:31.910][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:31.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.913][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.914][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:31.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.917][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:31.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.923][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:31.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:31.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.927][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.928][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:31.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.931][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.932][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.934][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:31.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.936][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.937][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.938][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:31.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.941][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.942][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:31.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:31.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:31.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.039][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.083][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.088][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.093][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.127][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.161][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.175][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172389592, (1S,2S)-3-allyl-2-ethyl-5,5-difluoro-cyclohexanol, (1S,2S)-2-ethyl-5,5-difluoro-3-prop-2-enyl-1-cyclohexanol, (1S,2S)-2-ethyl-5,5-difluoro-3-prop-2-enylcyclohexan-1-ol, (1S,2S)-2-ethyl-5,5-bis(fluoranyl)-3-prop-2-enyl-cyclohexan-1-ol, ...].
biodb.DEBUG[2024-11-09 16:06:32.193][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:32.194][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:32.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:32.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:32.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:32.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:32.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:32.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:32.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:32.217][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:32.221][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:32.222][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-09 16:06:32.224][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:32.226][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-09 16:06:32.228][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:32.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:32.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:32.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:32.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:32.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:32.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:32.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:32.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.329][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.334][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.377][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.386][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.405][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:32.406][private$selectFields]
biodb.TRACE[2024-11-09 16:06:32.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:32.409][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:32.410][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:32.411][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.412][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.416][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.417][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.419][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.421][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.422][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.425][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.427][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.429][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.430][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.432][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.434][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.435][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.437][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.439][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.440][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.441][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.444][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.445][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.446][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.448][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.450][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.451][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.453][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.454][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.456][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.458][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.462][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.465][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.467][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.468][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.472][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.476][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.478][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.479][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.481][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.482][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.484][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.486][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.487][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.491][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.492][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.493][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.495][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.497][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.498][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.500][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.501][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.503][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.505][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.506][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.507][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.510][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.511][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.512][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.514][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.515][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.519][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.520][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.521][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.524][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.526][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.528][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.529][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.531][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.533][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.534][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.535][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.538][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.539][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.540][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.542][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.543][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.545][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.547][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.552][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.553][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.554][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.556][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.558][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.559][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.561][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.562][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:32.564][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:32.565][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.568][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.569][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.571][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.574][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.575][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.578][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.579][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.580][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.584][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.585][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.588][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.590][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.593][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.602][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.606][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.607][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.608][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.612][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.615][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.617][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.620][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.621][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.625][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.626][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.630][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.632][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.633][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.635][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.636][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.638][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.640][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.641][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:32.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.729][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:32.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:32.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:32.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:32.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:32.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.891][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172399902, isopropyl (E)-2-phenylethenesulfonate, (E)-2-phenylethenesulfonic acid propan-2-yl ester, propan-2-yl (E)-2-phenylethenesulfonate, propan-2-yl (E)-2-phenylethenesulfonate, ...].
biodb.DEBUG[2024-11-09 16:06:32.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:32.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:32.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:32.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:32.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:32.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:32.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:32.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:32.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:32.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:32.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:32.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:32.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:32.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:32.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:32.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.992][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:32.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:32.997][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:32.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:32.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.058][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:33.059][private$selectFields]
biodb.TRACE[2024-11-09 16:06:33.061][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:33.062][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:33.063][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:33.064][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.068][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.069][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.070][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.072][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.073][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.075][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.077][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.078][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.079][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.082][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.083][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.084][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.086][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.087][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.089][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.091][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.092][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.095][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.097][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.100][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.105][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.106][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.107][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.109][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.111][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.112][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.114][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.119][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.120][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.123][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.126][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.128][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.129][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.130][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.133][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.134][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.135][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.137][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.138][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.142][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.143][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.144][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.147][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.148][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.149][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.151][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.152][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.154][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.156][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.157][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.158][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.160][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.162][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.163][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.176][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.178][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.180][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.183][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.184][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.187][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.189][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.190][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.192][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.194][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.195][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.197][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.198][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.202][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.208][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.209][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.212][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.213][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.214][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.217][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.218][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.219][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.223][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.224][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.227][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:33.229][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:33.230][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.234][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.235][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.236][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.238][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.239][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.241][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.243][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.244][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.245][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.248][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.249][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.250][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.252][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.253][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.255][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.257][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.258][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.262][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.263][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.264][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.266][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.268][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.271][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.272][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.274][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.276][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.281][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.285][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.287][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.290][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.295][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.296][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.297][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.300][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.301][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.302][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.304][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.306][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:33.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.394][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.413][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.442][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.446][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.528][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.545][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172392942, 5'-(trifluoromethyl)spiro[cyclopropane-1,3'-indane]-1'-one, 5-(trifluoromethyl)-1-spiro[2H-indene-3,1'-cyclopropane]one, 5-(trifluoromethyl)spiro[2H-indene-3,1'-cyclopropane]-1-one, 5-(trifluoromethyl)spiro[2H-indene-3,1'-cyclopropane]-1-one, ...].
biodb.DEBUG[2024-11-09 16:06:33.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:33.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:33.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:33.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:33.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:33.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:33.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:33.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.661][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.704][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.723][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:33.724][private$selectFields]
biodb.TRACE[2024-11-09 16:06:33.725][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:33.726][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:33.728][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:33.729][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.732][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.733][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.735][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.737][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.738][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.739][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.742][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.743][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.744][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.746][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.748][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.749][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.751][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.752][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.754][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.756][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.757][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.761][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.765][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.770][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.771][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.773][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.775][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.780][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.782][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.784][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.785][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.787][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.789][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.793][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.795][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.796][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.798][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.799][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.801][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.803][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.804][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.807][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.809][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.810][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.812][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.813][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.815][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.817][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.818][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.819][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.821][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.823][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.824][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.827][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.828][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.831][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.832][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.837][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.838][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.840][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.841][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.842][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.846][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.847][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.849][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.851][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.852][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.855][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.857][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.860][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.861][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.863][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.868][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.869][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.870][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.874][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.875][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.877][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.879][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:33.880][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:33.881][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.884][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.886][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.887][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.889][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.890][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.891][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.894][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.895][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.896][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:33.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.898][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.900][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.901][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:33.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.903][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.904][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.905][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:33.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.908][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.909][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:33.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:33.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.912][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:33.915][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:33.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.917][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:33.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.922][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.923][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:33.924][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:33.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.927][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:33.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.931][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.932][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.933][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:33.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.935][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.937][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:33.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:33.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.941][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.942][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:33.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.946][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.947][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:33.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.949][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.951][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.960][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:33.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.963][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.964][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:33.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:33.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.060][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.069][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.103][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.108][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.147][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.181][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.186][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.207][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172354789, 6-amino-4-chloro-3-cyclopropyl-2-methyl-benzimidoyl fluoride, 6-amino-4-chloro-3-cyclopropyl-2-methylbenzenecarboximidoyl fluoride, 6-amino-4-chloro-3-cyclopropyl-2-methylbenzenecarboximidoyl fluoride, 6-azanyl-4-chloranyl-3-cyclopropyl-2-methyl-benzenecarboximidoyl fluoride, ...].
biodb.DEBUG[2024-11-09 16:06:34.209][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:34.210][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:34.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:34.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:34.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:34.228][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:34.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:34.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:34.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:34.238][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:34.242][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:34.243][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-11-09 16:06:34.245][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:34.247][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-11-09 16:06:34.249][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:34.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:34.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:34.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:34.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:34.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:34.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:34.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:34.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.360][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.365][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.409][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.418][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.428][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:34.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:34.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:34.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:34.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.437][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:34.438][private$selectFields]
biodb.TRACE[2024-11-09 16:06:34.439][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:34.441][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:34.442][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:34.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.446][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.448][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.449][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.451][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.452][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.454][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.456][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.457][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.458][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.461][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.462][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.463][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.465][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.467][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.468][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.470][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.471][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.475][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.476][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.477][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.480][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.484][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.485][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.487][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.489][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.490][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.494][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.495][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.496][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.498][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.499][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.503][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.504][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.505][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.508][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.509][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.510][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.512][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.513][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.515][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.517][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.518][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:34.519][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:34.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.522][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.523][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.526][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.528][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.529][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.531][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.532][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.533][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.537][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.538][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.542][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.543][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.546][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.548][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.551][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.552][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.555][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.559][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.564][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.565][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.566][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.569][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.570][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.574][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.578][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.579][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.580][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.583][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.587][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.588][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.590][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.592][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.593][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.594][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.597][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.598][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:34.599][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:34.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.601][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.603][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:34.604][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:34.605][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.609][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.610][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.611][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.613][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.614][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.616][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.618][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.619][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.620][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.622][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.624][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.626][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.631][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.633][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.636][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.637][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.639][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.645][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.647][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.653][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.655][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.658][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.661][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.666][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.667][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.675][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.676][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.678][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.680][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.681][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.682][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.686][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:34.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:34.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.793][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:34.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:34.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:34.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:34.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.827][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.832][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.836][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:34.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:34.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.841][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:34.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:34.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.871][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:34.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:34.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:34.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:34.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:34.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172391226, 1-(2-ethoxyethyl)-3-methyl-pyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methylpyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methylpyrrolo[3,2-c]pyridine, 1-(2-ethoxyethyl)-3-methyl-pyrrolo[3,2-c]pyridine, ...].
biodb.DEBUG[2024-11-09 16:06:34.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:34.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:34.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:34.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:34.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:34.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:34.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:34.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:34.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:34.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:34.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:34.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:34.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:34.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:34.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.037][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.042][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.056][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.065][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.089][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.108][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.113][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:35.114][private$selectFields]
biodb.TRACE[2024-11-09 16:06:35.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:35.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:35.117][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:35.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.122][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.123][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.124][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.127][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.128][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.129][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.131][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.140][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.142][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.146][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.147][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.149][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.151][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.152][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.154][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.156][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.157][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.159][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.160][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.164][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.165][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.169][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.170][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.171][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.173][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.175][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.178][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.180][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.183][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.184][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.188][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.193][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.194][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.195][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.198][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.199][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.200][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.202][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.203][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.205][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.207][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.208][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.209][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.212][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.213][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.214][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.217][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.219][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.222][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.223][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.227][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.228][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.231][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.233][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.235][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.236][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.241][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.242][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.244][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.246][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.247][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.250][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.252][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.254][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.255][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.263][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.264][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.266][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.274][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.275][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.277][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.278][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.280][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.282][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.283][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.284][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.287][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.288][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:35.289][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:35.290][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.294][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.295][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.296][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.298][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.300][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.301][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.303][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.304][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.306][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.308][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.309][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.310][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.313][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.314][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.315][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.317][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.318][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.322][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.323][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.324][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.327][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.328][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.329][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.331][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.333][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.334][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.336][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.337][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.338][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.341][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.345][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.347][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.348][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.350][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.351][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.355][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.356][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.357][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.359][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.360][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.362][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.364][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.365][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:35.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.496][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.506][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.548][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.614][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172389755, 8,8-difluoro-3-isopropyl-bicyclo[3.2.1]octan-2-ol, 8,8-difluoro-3-propan-2-yl-2-bicyclo[3.2.1]octanol, 8,8-difluoro-3-propan-2-ylbicyclo[3.2.1]octan-2-ol, 8,8-bis(fluoranyl)-3-propan-2-yl-bicyclo[3.2.1]octan-2-ol, ...].
biodb.DEBUG[2024-11-09 16:06:35.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:35.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:35.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:35.625][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:35.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:35.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:35.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:35.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.718][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.733][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.753][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.767][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.782][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.802][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.812][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:35.813][private$selectFields]
biodb.TRACE[2024-11-09 16:06:35.814][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:35.815][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:35.816][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:35.817][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.819][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.821][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.822][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.823][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.826][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.827][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.828][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.830][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.832][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.833][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.835][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.836][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.838][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.840][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.841][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.842][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.845][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.846][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.849][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.851][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.852][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.854][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.857][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.859][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.860][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.861][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.864][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.868][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.870][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.873][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.874][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.878][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.883][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.884][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.885][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.887][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.888][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.890][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.892][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.893][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.894][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.897][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.898][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.899][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.901][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.902][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.904][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.906][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.907][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.908][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:35.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.911][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.912][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.913][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:35.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.915][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.916][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.918][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:35.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.920][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.921][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.922][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:35.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.924][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.926][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:35.927][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:35.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.929][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.930][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:35.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:35.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.942][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.945][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:35.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.947][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.949][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:35.950][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:35.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.952][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.953][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.955][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:35.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.957][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:35.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.962][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.963][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:35.964][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:35.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.967][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.969][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:35.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.971][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.973][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.974][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:35.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.976][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.977][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.979][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:35.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.981][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.982][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.984][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:35.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.986][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.987][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:35.988][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:35.990][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:35.991][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:35.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.993][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.994][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.996][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:35.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:35.998][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:35.999][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.000][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.003][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.004][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.005][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.007][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.008][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.010][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.012][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.013][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.014][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.017][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.018][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.019][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.024][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.026][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.031][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.032][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.033][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.036][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.040][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.045][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.046][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.054][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.055][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.056][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.059][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.060][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.061][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.065][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:36.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.153][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.196][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.200][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.219][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.267][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.272][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.281][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.303][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172389592, (1S,2S)-3-allyl-2-ethyl-5,5-difluoro-cyclohexanol, (1S,2S)-2-ethyl-5,5-difluoro-3-prop-2-enyl-1-cyclohexanol, (1S,2S)-2-ethyl-5,5-difluoro-3-prop-2-enylcyclohexan-1-ol, (1S,2S)-2-ethyl-5,5-bis(fluoranyl)-3-prop-2-enyl-cyclohexan-1-ol, ...].
biodb.DEBUG[2024-11-09 16:06:36.304][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:36.305][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-11-09 16:06:36.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:36.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:36.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:36.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:36.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:36.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:36.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:36.337][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-11-09 16:06:36.341][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-11-09 16:06:36.342][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-11-09 16:06:36.344][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:36.346][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-11-09 16:06:36.348][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-11-09 16:06:36.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:36.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:36.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:36.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:36.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:36.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:36.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:36.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:36.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:36.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.522][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:36.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.526][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:36.528][private$selectFields]
biodb.TRACE[2024-11-09 16:06:36.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:36.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:36.531][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:36.532][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.533][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.536][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.537][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.538][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.541][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.543][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.545][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.546][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.547][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.550][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.551][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.552][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.554][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.555][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.557][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.559][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.560][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.561][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.563][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.566][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.568][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.569][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.573][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.574][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.575][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.577][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.578][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.582][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.584][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.586][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.588][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.591][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.596][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.597][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.598][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.600][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.602][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.603][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.605][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.606][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:36.607][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:36.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.610][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.611][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.613][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.615][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.616][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.617][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.620][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.621][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.622][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.624][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.626][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.627][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.629][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.630][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.631][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.634][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.635][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.636][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.638][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.640][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.641][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.643][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.646][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.648][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.649][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.650][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.652][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.654][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.655][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.657][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.658][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.662][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.667][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.668][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.669][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.671][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.676][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.677][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.678][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.681][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.682][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.683][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.685][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.686][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:36.688][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:36.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.690][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.691][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:36.692][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:36.694][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.697][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.698][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.699][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.702][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.703][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.704][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.705][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.706][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.708][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.716][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.720][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.721][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.723][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.725][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.726][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.728][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.730][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.731][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.732][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.735][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.739][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.741][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.742][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.744][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.745][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.747][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.749][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.750][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.751][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.754][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.755][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.756][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.758][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.760][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.763][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.764][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.766][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.768][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.769][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.770][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.773][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.774][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.775][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:36.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.777][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.779][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:36.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:36.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:36.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.799][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:36.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:36.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:36.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:36.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.878][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:36.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:36.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:36.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.902][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.912][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.917][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:36.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:36.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:36.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:36.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:36.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.985][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:36.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:36.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:36.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172399902, isopropyl (E)-2-phenylethenesulfonate, (E)-2-phenylethenesulfonic acid propan-2-yl ester, propan-2-yl (E)-2-phenylethenesulfonate, propan-2-yl (E)-2-phenylethenesulfonate, ...].
biodb.DEBUG[2024-11-09 16:06:37.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:37.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:37.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:37.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:37.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:37.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:37.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:37.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.130][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.135][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.188][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.193][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.207][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:37.208][private$selectFields]
biodb.TRACE[2024-11-09 16:06:37.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:37.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:37.212][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:37.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.214][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.216][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.218][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.219][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.221][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.222][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.223][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.226][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.227][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.228][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.230][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.232][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.233][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.235][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.236][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.238][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.240][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.241][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.244][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.246][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.249][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.254][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.255][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.256][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.258][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.263][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.264][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.268][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.269][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.270][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.273][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.277][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.278][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.280][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.282][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.283][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.284][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.287][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.288][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.289][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.291][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.293][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.294][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.296][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.297][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.298][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.301][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.302][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.303][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.305][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.307][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.308][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.310][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.311][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.313][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.315][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.316][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.317][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.319][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.321][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.324][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.325][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.326][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.329][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.333][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.335][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.336][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.338][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.339][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.343][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.347][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.348][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.350][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.352][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.353][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.354][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.357][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.358][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.359][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.361][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.362][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.364][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.366][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.367][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.368][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.370][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.372][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:37.373][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:37.374][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.377][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.379][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.380][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.382][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.383][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.385][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.387][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.388][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.389][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.391][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.393][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.394][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.396][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.397][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.399][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.401][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.402][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.403][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.405][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.407][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.410][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.411][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.412][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.415][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.416][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.417][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.419][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.421][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.424][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.425][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.426][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.429][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.430][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.431][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.433][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.435][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.436][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.438][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.439][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.440][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.443][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.444][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.445][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.447][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.449][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:37.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.548][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.553][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.563][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.568][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.592][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.673][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172392942, 5'-(trifluoromethyl)spiro[cyclopropane-1,3'-indane]-1'-one, 5-(trifluoromethyl)-1-spiro[2H-indene-3,1'-cyclopropane]one, 5-(trifluoromethyl)spiro[2H-indene-3,1'-cyclopropane]-1-one, 5-(trifluoromethyl)spiro[2H-indene-3,1'-cyclopropane]-1-one, ...].
biodb.DEBUG[2024-11-09 16:06:37.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:37.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:37.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:37.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:37.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:37.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:37.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:37.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.778][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.807][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.893][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:37.902][private$selectFields]
biodb.TRACE[2024-11-09 16:06:37.903][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-11-09 16:06:37.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-11-09 16:06:37.906][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:37.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.909][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.911][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.913][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.914][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.916][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.917][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.919][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:37.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.921][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.922][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.924][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:37.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.926][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.927][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.928][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:37.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.931][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.932][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.933][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:37.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.936][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.937][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:37.938][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:37.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.940][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.942][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:37.943][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:37.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.945][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:37.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.950][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.951][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:37.953][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:37.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.955][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.956][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:37.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.960][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.961][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:37.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.964][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:37.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:37.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.969][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:37.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.974][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.975][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.976][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:37.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.978][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.980][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.981][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:37.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.983][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.984][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.985][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:37.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.988][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:37.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:37.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.992][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.994][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.995][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:37.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:37.997][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:37.998][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.000][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.002][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.003][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.004][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.007][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.008][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.009][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.011][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.013][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.014][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.016][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.017][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:38.018][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:38.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.021][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:38.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:38.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.025][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.027][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.030][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.031][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:38.032][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:38.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.035][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.036][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.039][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.041][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.044][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.045][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:38.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:38.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.049][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.053][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.055][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.056][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.058][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.059][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.061][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.063][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.064][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-11-09 16:06:38.065][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-11-09 16:06:38.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.068][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.069][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:38.070][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-11-09 16:06:38.071][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:38.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:38.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.075][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.076][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:38.077][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:38.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.079][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.081][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.082][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.084][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.085][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.086][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.089][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.090][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.091][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.093][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.095][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.096][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.098][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.099][ef$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:38.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:38.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.103][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:38.105][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:38.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.107][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.108][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.112][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.113][ef$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:38.114][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:38.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.117][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.118][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.121][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.126][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.127][ef$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:38.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:38.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.130][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.132][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.133][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.135][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.136][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.137][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.140][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.141][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.142][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.144][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.146][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-11-09 16:06:38.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:38.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:38.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:38.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:38.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:38.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:38.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:38.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-11-09 16:06:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-11-09 16:06:38.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-11-09 16:06:38.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-11-09 16:06:38.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-11-09 16:06:38.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:38.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:38.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-11-09 16:06:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-11-09 16:06:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:38.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:38.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-11-09 16:06:38.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-11-09 16:06:38.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-11-09 16:06:38.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.276][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:38.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:38.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.281][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:38.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:38.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.294][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-11-09 16:06:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-11-09 16:06:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.305][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-11-09 16:06:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-11-09 16:06:38.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:38.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:38.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:38.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-11-09 16:06:38.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-11-09 16:06:38.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-11-09 16:06:38.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.374][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-11-09 16:06:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172354789, 6-amino-4-chloro-3-cyclopropyl-2-methyl-benzimidoyl fluoride, 6-amino-4-chloro-3-cyclopropyl-2-methylbenzenecarboximidoyl fluoride, 6-amino-4-chloro-3-cyclopropyl-2-methylbenzenecarboximidoyl fluoride, 6-azanyl-4-chloranyl-3-cyclopropyl-2-methyl-benzenecarboximidoyl fluoride, ...].
biodb.DEBUG[2024-11-09 16:06:38.397][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-11-09 16:06:38.399][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-11-09 16:06:38.405][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:38.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-11-09 16:06:38.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:38.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:06:38.419][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-09 16:06:38.421][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-11-09 16:06:38.422][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-11-09 16:06:38.423][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-09 16:06:38.424][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:38.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:38.426][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.429][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-11-09 16:06:38.444][biodb::testContext]
biodb.INFO [2024-11-09 16:06:38.446][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-09 16:06:38.447][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-11-09 16:06:38.448][biodb::testContext] ********************************************************************************
biodb.INFO [2024-11-09 16:06:38.449][biodb::testContext]
biodb.INFO [2024-11-09 16:06:38.452][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.14.0.
biodb.DEBUG[2024-11-09 16:06:38.455][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-11-09 16:06:38.460][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:06:38.462][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-11-09 16:06:38.463][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-11-09 16:06:38.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.467][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-11-09 16:06:38.469][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-11-09 16:06:38.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.473][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-11-09 16:06:38.474][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-11-09 16:06:38.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.479][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-11-09 16:06:38.480][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-11-09 16:06:38.481][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-11-09 16:06:38.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.486][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-11-09 16:06:38.487][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-11-09 16:06:38.488][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-11-09 16:06:38.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.492][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-11-09 16:06:38.494][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-11-09 16:06:38.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.498][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-11-09 16:06:38.499][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-11-09 16:06:38.501][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-11-09 16:06:38.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.505][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-11-09 16:06:38.506][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-11-09 16:06:38.507][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.511][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-11-09 16:06:38.512][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-11-09 16:06:38.513][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-11-09 16:06:38.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.517][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-11-09 16:06:38.519][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-11-09 16:06:38.520][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-11-09 16:06:38.521][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-11-09 16:06:38.522][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-11-09 16:06:38.523][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-11-09 16:06:38.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.528][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-11-09 16:06:38.529][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-11-09 16:06:38.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.533][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-11-09 16:06:38.535][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-11-09 16:06:38.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.539][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-11-09 16:06:38.540][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-11-09 16:06:38.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.545][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-11-09 16:06:38.546][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-11-09 16:06:38.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.550][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-11-09 16:06:38.551][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-11-09 16:06:38.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.556][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-11-09 16:06:38.557][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-11-09 16:06:38.560][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-11-09 16:06:38.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.565][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-11-09 16:06:38.566][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-11-09 16:06:38.567][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-11-09 16:06:38.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.572][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-11-09 16:06:38.574][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.575][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-11-09 16:06:38.576][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.577][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:06:38.578][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.580][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.581][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.582][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.583][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-09 16:06:38.584][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:06:38.586][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.587][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-11-09 16:06:38.588][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:06:38.589][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.590][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.592][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:06:38.592][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:06:38.592][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:06:38.592][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-09 16:06:38.592][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-09 16:06:38.593][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:06:38.594][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:38.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:38.596][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:06:38.597][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:38.598][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:38.600][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.601][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.602][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:06:38.603][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:06:38.604][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.605][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.607][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-11-09 16:06:38.609][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.610][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-11-09 16:06:38.611][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.612][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:06:38.614][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.616][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.617][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.619][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.620][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-09 16:06:38.622][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:06:38.623][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.624][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-11-09 16:06:38.625][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:06:38.627][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.628][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.629][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:06:38.629][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:06:38.629][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:06:38.629][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-11-09 16:06:38.629][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-11-09 16:06:38.630][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:06:38.632][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:38.633][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:38.634][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:06:38.635][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:38.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:38.637][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.638][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.640][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:06:38.641][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:06:38.642][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.644][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.646][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-11-09 16:06:38.648][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.649][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-11-09 16:06:38.650][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.651][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:06:38.653][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.654][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.655][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.656][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.657][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-11-09 16:06:38.659][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:06:38.660][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.661][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-11-09 16:06:38.662][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:06:38.663][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.665][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.666][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.667][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:06:38.668][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:38.669][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:38.670][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:06:38.672][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:38.673][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:38.674][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.675][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.676][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:06:38.677][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:06:38.678][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.679][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.681][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-11-09 16:06:38.683][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.684][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-11-09 16:06:38.685][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.686][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:06:38.687][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.697][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.699][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.701][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.702][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-11-09 16:06:38.703][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:06:38.705][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.706][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-11-09 16:06:38.707][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:06:38.708][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.710][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:38.711][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.712][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-11-09 16:06:38.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:38.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:38.716][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:06:38.717][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:38.718][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:38.719][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:06:38.720][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.722][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:06:38.723][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:06:38.724][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:38.725][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:38.727][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:06:38.728][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.783][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.785][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.791][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.818][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.821][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.824][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-11-09 16:06:38.825][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-11-09 16:06:38.827][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-11-09 16:06:38.828][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-11-09 16:06:38.830][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-11-09 16:06:38.832][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-11-09 16:06:38.833][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-11-09 16:06:38.835][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-11-09 16:06:38.836][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-11-09 16:06:38.838][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-11-09 16:06:38.839][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-11-09 16:06:38.841][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-11-09 16:06:38.842][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-11-09 16:06:38.844][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-11-09 16:06:38.846][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-09 16:06:38.847][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-09 16:06:38.849][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-11-09 16:06:38.850][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-11-09 16:06:38.852][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-11-09 16:06:38.853][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-11-09 16:06:38.855][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-11-09 16:06:38.857][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-11-09 16:06:38.858][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-11-09 16:06:38.860][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-11-09 16:06:38.861][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-11-09 16:06:38.863][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-11-09 16:06:38.865][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-11-09 16:06:38.866][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-11-09 16:06:38.868][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-11-09 16:06:38.869][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-11-09 16:06:38.871][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-11-09 16:06:38.872][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-11-09 16:06:38.874][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-11-09 16:06:38.876][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-11-09 16:06:38.877][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-11-09 16:06:38.879][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-11-09 16:06:38.880][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-11-09 16:06:38.882][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-11-09 16:06:38.883][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-11-09 16:06:38.885][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-11-09 16:06:38.887][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-11-09 16:06:38.888][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-11-09 16:06:38.890][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-11-09 16:06:38.891][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-11-09 16:06:38.893][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-11-09 16:06:38.894][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-09 16:06:38.896][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-11-09 16:06:38.898][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-11-09 16:06:38.899][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-11-09 16:06:38.901][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-11-09 16:06:38.902][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-11-09 16:06:38.904][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-11-09 16:06:38.905][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-11-09 16:06:38.907][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-11-09 16:06:38.908][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-11-09 16:06:38.910][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-11-09 16:06:38.912][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-11-09 16:06:38.913][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-11-09 16:06:38.915][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-11-09 16:06:38.916][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-11-09 16:06:38.918][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-11-09 16:06:38.919][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-11-09 16:06:38.921][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-11-09 16:06:38.922][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-11-09 16:06:38.924][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-11-09 16:06:38.925][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-11-09 16:06:38.927][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-11-09 16:06:38.929][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-11-09 16:06:38.930][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-11-09 16:06:38.932][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-11-09 16:06:38.933][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-11-09 16:06:38.935][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-11-09 16:06:38.936][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-11-09 16:06:38.938][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-11-09 16:06:38.939][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-11-09 16:06:38.941][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-11-09 16:06:38.942][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-11-09 16:06:38.944][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-11-09 16:06:38.946][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-11-09 16:06:38.947][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-11-09 16:06:38.949][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-11-09 16:06:38.950][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-11-09 16:06:38.952][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-11-09 16:06:38.953][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-11-09 16:06:38.956][initialize] This is biodb version 1.14.0.
biodb.DEBUG[2024-11-09 16:06:38.957][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-11-09 16:06:38.958][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.960][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:38.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:38.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:38.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:38.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:38.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:38.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:38.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:38.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:38.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:38.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:38.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:38.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:38.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:38.998][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:38.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.045][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-11-09 16:06:39.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-11-09 16:06:39.102][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-11-09 16:06:39.104][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-11-09 16:06:39.107][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.108][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-11-09 16:06:39.109][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.110][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:06:39.111][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.113][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.114][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.115][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.116][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-11-09 16:06:39.118][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:06:39.119][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.120][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-11-09 16:06:39.121][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:06:39.122][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-11-09 16:06:39.122][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-11-09 16:06:39.124][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:39.125][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:39.126][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-09 16:06:39.127][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:39.128][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:39.130][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:06:39.131][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:39.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:39.133][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.134][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-11-09 16:06:39.134][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-11-09 16:06:39.135][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:06:39.136][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:06:39.137][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.139][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:39.140][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-11-09 16:06:39.142][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.143][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-11-09 16:06:39.144][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.145][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:06:39.147][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.148][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.149][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.150][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.151][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:06:39.152][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:06:39.154][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.155][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-11-09 16:06:39.156][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:06:39.157][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-11-09 16:06:39.157][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-11-09 16:06:39.157][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-11-09 16:06:39.157][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-11-09 16:06:39.157][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-11-09 16:06:39.157][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-11-09 16:06:39.158][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:39.160][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:06:39.161][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-11-09 16:06:39.162][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:39.163][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:39.164][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:06:39.165][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:39.166][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:39.168][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.169][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:39.169][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:06:39.170][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:06:39.171][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:06:39.172][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.173][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:39.175][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-11-09 16:06:39.177][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:39.178][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-11-09 16:06:39.179][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.180][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:06:39.182][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.183][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.184][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.185][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.186][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:06:39.188][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:06:39.189][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.190][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-11-09 16:06:39.191][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.192][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-11-09 16:06:39.194][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:39.195][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-11-09 16:06:39.195][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-11-09 16:06:39.195][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-11-09 16:06:39.196][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-09 16:06:39.197][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:39.198][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:39.199][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:06:39.201][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:39.202][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:39.203][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.204][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:39.204][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:06:39.204][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-09 16:06:39.205][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:06:39.206][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:06:39.207][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.209][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:06:39.210][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-09 16:06:39.212][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.213][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-11-09 16:06:39.214][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.216][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-11-09 16:06:39.217][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.218][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.219][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.220][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.221][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-11-09 16:06:39.223][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-11-09 16:06:39.224][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.225][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-11-09 16:06:39.226][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-11-09 16:06:39.227][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-11-09 16:06:39.227][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-11-09 16:06:39.229][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-11-09 16:06:39.230][self$setPropertyValue]
biodb.DEBUG[2024-11-09 16:06:39.231][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-11-09 16:06:39.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:39.233][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:39.234][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-11-09 16:06:39.236][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-11-09 16:06:39.237][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-11-09 16:06:39.238][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-11-09 16:06:39.239][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-11-09 16:06:39.239][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-11-09 16:06:39.239][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-11-09 16:06:39.240][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-11-09 16:06:39.241][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-11-09 16:06:39.242][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-11-09 16:06:39.244][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:06:39.245][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-11-09 16:06:39.247][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-11-09 16:06:39.249][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-11-09 16:06:39.250][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-11-09 16:06:39.252][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-11-09 16:06:39.254][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-11-09 16:06:39.259][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-09 16:06:39.260][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-11-09 16:06:39.262][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-11-09 16:06:39.263][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-11-09 16:06:39.265][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-09 16:06:39.266][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-09 16:06:39.268][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-11-09 16:06:39.269][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-09 16:06:39.270][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-11-09 16:06:39.272][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-11-09 16:06:39.277][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-11-09 16:06:39.283][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.284][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-11-09 16:06:39.285][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:39.286][biodb::testThat]
biodb.TRACE[2024-11-09 16:06:39.300][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-11-09 16:06:39.302][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:06:39.305][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-11-09 16:06:39.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:39.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:39.322][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.325][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.332][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.333][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.335][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:39.389][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-11-09 16:06:39.392][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.399][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:06:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:06:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.408][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:06:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:06:39.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:06:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:06:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.536][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.540][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.574][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.589][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.593][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.600][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.603][ef$get] fields variable is a list.
biodb.INFO [2024-11-09 16:06:39.616][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.617][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-11-09 16:06:39.618][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:39.619][biodb::testThat]
biodb.DEBUG[2024-11-09 16:06:39.622][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-11-09 16:06:39.624][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-11-09 16:06:39.627][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-11-09 16:06:39.630][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-11-09 16:06:39.641][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-11-09 16:06:39.643][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-11-09 16:06:39.645][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-11-09 16:06:39.646][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-11-09 16:06:39.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-11-09 16:06:39.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:39.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:39.657][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:39.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:39.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:39.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-11-09 16:06:39.663][ef$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.664][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.667][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.688][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.691][ef$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-11-09 16:06:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-11-09 16:06:39.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-11-09 16:06:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-11-09 16:06:39.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-11-09 16:06:39.745][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-11-09 16:06:39.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-11-09 16:06:39.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-11-09 16:06:39.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:06:39.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-11-09 16:06:39.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:06:39.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-11-09 16:06:39.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:06:39.772][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.773][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-11-09 16:06:39.774][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:39.775][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.784][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.786][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-11-09 16:06:39.787][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:39.788][biodb::testThat]
biodb.WARN [2024-11-09 16:06:39.792][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-11-09 16:06:39.796][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-11-09 16:06:39.807][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.808][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-11-09 16:06:39.810][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:39.811][biodb::testThat]
biodb.TRACE[2024-11-09 16:06:39.823][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:06:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:06:39.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.838][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:06:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:06:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.852][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:06:39.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:06:39.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.859][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-11-09 16:06:39.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.868][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:06:39.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-11-09 16:06:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.878][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-11-09 16:06:39.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.883][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-11-09 16:06:39.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-11-09 16:06:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-11-09 16:06:39.887][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-11-09 16:06:39.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-11-09 16:06:39.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-11-09 16:06:39.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-11-09 16:06:39.910][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.911][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-11-09 16:06:39.912][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:39.913][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.924][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.926][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-11-09 16:06:39.927][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:39.928][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.940][biodb::testThat]
biodb.INFO [2024-11-09 16:06:39.941][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-11-09 16:06:39.942][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:39.943][biodb::testThat]
biodb.DEBUG[2024-11-09 16:06:39.947][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-11-09 16:06:40.074][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-11-09 16:06:40.287][biodb::testThat]
biodb.INFO [2024-11-09 16:06:40.288][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-11-09 16:06:40.289][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-11-09 16:06:40.290][biodb::testThat]
biodb.DEBUG[2024-11-09 16:06:40.375][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-11-09 16:06:40.452][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-11-09 16:06:40.453][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-11-09 16:06:40.455][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-11-09 16:06:40.456][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-11-09 16:06:40.457][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-11-09 16:06:40.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-11-09 16:06:40.459][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-11-09 16:06:40.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-11-09 16:06:40.461][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-11-09 16:06:40.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1038 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1038 ]
> 
> proc.time()
   user  system elapsed 
  56.56    3.51  101.46

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using options '--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error'
* checking for file 'biodbNcbi/DESCRIPTION' ... OK
* this is package 'biodbNcbi' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbNcbi' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in 'longtests' ... WARNING
'library' or 'require' call not declared from: 'biodbNci'
* checking tests in 'longtests' ...
  Running 'testthat.R'
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  'F:/biocbuild/bbs-3.20-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log'
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package 'biodbNcbi' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)