Back to Build/check report for BioC 3.19 experimental data |
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This page was generated on 2024-06-20 14:51 -0400 (Thu, 20 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4758 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 27/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
BioPlex 1.10.0 (landing page) Ludwig Geistlinger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
To the developers/maintainers of the BioPlex package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: BioPlex |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex |
StartedAt: 2024-06-20 10:13:09 -0400 (Thu, 20 Jun 2024) |
EndedAt: 2024-06-20 10:13:47 -0400 (Thu, 20 Jun 2024) |
EllapsedTime: 38.7 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioPlex ### ############################################################################## ############################################################################## * checking for file ‘BioPlex/DESCRIPTION’ ... OK * preparing ‘BioPlex’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BasicChecks.Rmd’ using rmarkdown Warning: call dbDisconnect() when finished working with a connection Quitting from lines 51-55 [orgdb] (BasicChecks.Rmd) Error: processing vignette 'BasicChecks.Rmd' failed with diagnostics: failed to load resource name: AH116710 title: org.Hs.eg.db.sqlite reason: file is not a database --- failed re-building ‘BasicChecks.Rmd’ --- re-building ‘BioPlex.Rmd’ using rmarkdown Quitting from lines 102-106 [orgdb] (BioPlex.Rmd) Error: processing vignette 'BioPlex.Rmd' failed with diagnostics: failed to load resource name: AH116710 title: org.Hs.eg.db.sqlite reason: file is not a database --- failed re-building ‘BioPlex.Rmd’ SUMMARY: processing the following files failed: ‘BasicChecks.Rmd’ ‘BioPlex.Rmd’ Error: Vignette re-building failed. Execution halted