| Back to Build/check report for BioC 3.22 experimental data |
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This page was generated on 2026-01-22 15:41 -0500 (Thu, 22 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4886 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 44/435 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| bugphyzz 1.4.0 (landing page) Samuel Gamboa
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
|
To the developers/maintainers of the bugphyzz package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: bugphyzz |
| Version: 1.4.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data bugphyzz |
| StartedAt: 2026-01-22 11:09:03 -0500 (Thu, 22 Jan 2026) |
| EndedAt: 2026-01-22 11:09:17 -0500 (Thu, 22 Jan 2026) |
| EllapsedTime: 14.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data bugphyzz
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* checking for file ‘bugphyzz/DESCRIPTION’ ... OK
* preparing ‘bugphyzz’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bugphyzz.Rmd’ using rmarkdown
Quitting from bugphyzz.Rmd:188-191 [import data]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_failure>
Error in `httr2::req_perform()`:
! Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [zenodo.org]:
SSL connection timeout
---
Backtrace:
▆
1. └─bugphyzz::importBugphyzz()
2. └─bugphyzz:::.downloadResource(version, forceDownload)
3. └─bugphyzz:::.downloadZ(suffix, forceDownload)
4. └─httr2::req_perform(req)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'bugphyzz.Rmd' failed with diagnostics:
Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [zenodo.org]:
SSL connection timeout
--- failed re-building ‘bugphyzz.Rmd’
--- re-building ‘sources.Rmd’ using rmarkdown
--- finished re-building ‘sources.Rmd’
SUMMARY: processing the following file failed:
‘bugphyzz.Rmd’
Error: Vignette re-building failed.
Execution halted