Back to Workflows build report for BioC 3.22

This page was generated on 2026-04-07 16:30 -0400 (Tue, 07 Apr 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4897
merida1macOS 12.7.6 Montereyx86_644.5.2 (2025-10-31) -- "[Not] Part in a Rumble" 4690
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 7/29HostnameOS / ArchINSTALLBUILD
cytofWorkflow 1.34.0  (landing page)
Mark D. Robinson
Snapshot Date: 2026-04-07 12:45 -0400 (Tue, 07 Apr 2026)
git_url: https://git.bioconductor.org/packages/cytofWorkflow
git_branch: RELEASE_3_22
git_last_commit: 477096a
git_last_commit_date: 2025-10-29 09:46:33 -0400 (Wed, 29 Oct 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    ERROR  

BUILD results for cytofWorkflow on merida1

To the developers/maintainers of the cytofWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cytofWorkflow
Version: 1.34.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cytofWorkflow
StartedAt: 2026-04-07 13:04:44 -0400 (Tue, 07 Apr 2026)
EndedAt: 2026-04-07 13:08:47 -0400 (Tue, 07 Apr 2026)
EllapsedTime: 242.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cytofWorkflow
###
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* checking for file ‘cytofWorkflow/DESCRIPTION’ ... OK
* preparing ‘cytofWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘cytofWorkflow.Rmd’ using rmarkdown
trying URL 'https://zenodo.org/records/10039274/files/PBMC8_metadata.xlsx'
Content type 'application/octet-stream' length 56676 bytes (55 KB)
==================================================
downloaded 55 KB

trying URL 'https://zenodo.org/records/10039274/files/PBMC8_panel_v3.xlsx'
Content type 'application/octet-stream' length 6423 bytes
==================================================
downloaded 6423 bytes

2026-04-07 13:05:58.484 R[2758:514389361] XType: com.apple.fonts is not accessible.
2026-04-07 13:05:58.484 R[2758:514389361] XType: XTFontStaticRegistry is enabled.
Warning in file(con, "w") :
  cannot open file 'cytofWorkflow.knit.md': No space left on device
Error: processing vignette 'cytofWorkflow.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building ‘cytofWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘cytofWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted