Package: ppiData

Version: 0.1.7

Command: D:\biocbld\bbs-2.0-bioc\R\bin\R.exe CMD check ppiData_0.1.7.tar.gz

RetCode: 0

Time: 238.5 seconds

Status: WARNINGS

CheckDir: ppiData.Rcheck

Warnings: 2

* checking for working latex ... OK
* using log directory 'D:/biocbld/bbs-2.0-data-experiment/meat/ppiData.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.7'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ItoCore2001BPGraph ItoFull2001BPGraph twTableAPMS twTableY2H
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... WARNING
Data sets with usage in documentation object 'bpExperimentNames' but not in code:
  bpGraphNames

Data sets with usage in documentation object 'intActPPIData' but not in code:
  intactPPIData

Data sets with usage in documentation object 'stochasticBaits' but not in code:
  stocasticBaits

* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating ppiData-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating ppiData-manual.tex ... OK
* checking ppiData-manual.tex ... OK

WARNING: There were 2 warnings, see
  D:/biocbld/bbs-2.0-data-experiment/meat/ppiData.Rcheck/00check.log
for details

installing R.css in D:/biocbld/bbs-2.0-data-experiment/meat/ppiData.Rcheck


---------- Making package ppiData ------------
  adding build stamp to DESCRIPTION
  installing R files
  installing inst files
  installing data files
  preparing package ppiData for lazy loading
Loading required package: Rgraphviz
Loading required package: graph
Loading required package: geneplotter
Loading required package: annotate
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: lattice
KernSmooth 2.22 installed
Copyright M. P. Wand 1997

Attaching package: 'Rgraphviz'


	The following object(s) are masked from package:annotate :

	 toFile 

  preparing package ppiData for lazy data loading
  installing man source files
  installing indices
  installing help
 >>> Building/Updating help pages for package 'ppiData'
     Formats: text html latex example chm 
  Cagney2001BPGraph                 text    html    latex   example chm
  Gavin2002BPGraph                  text    html    latex   example chm
  Gavin2006bPGraph                  text    html    latex   example chm
  Hazbun2003BPGraph                 text    html    latex   example chm
  Ho2002BPGraph                     text    html    latex   example chm
  Ito2001BPGraph                    text    html    latex   example chm
  Krogan2004BPGraph                 text    html    latex   example chm
  Krogan2006BPGraph                 text    html    latex   example chm
  Tong2002BPGraph                   text    html    latex   example chm
  Uetz2000BPGraph1                  text    html    latex   example chm
  Uetz2000BPGraph2                  text    html    latex   example chm
  Zhao2005BPGraph                   text    html    latex   example chm
  bpExperimentNames                 text    html    latex   example chm
  collectIntactPPIData              text    html    latex   example chm
  createBPList                      text    html    latex   example chm
  intAct2Sys                        text    html    latex   example chm
  intActPPIData                     text    html    latex   example chm
  map2Systematic                    text    html    latex   example chm
  map2Systematic2                   text    html    latex           chm
  ppipred                           text    html    latex   example chm
  proteinProperty                   text    html    latex   example chm
  sWAC2Sys                          text    html    latex   example chm
  stochasticBaits                   text    html    latex   example chm
  tableList                         text    html    latex   example chm
  viableProteins                    text    html    latex   example chm
  y2h                               text    html    latex   example chm
  y2hSysGW                          text    html    latex   example chm
Microsoft HTML Help Compiler 4.74.8702

Compiling d:\biocbld\bbs-2.0-data-experiment\meat\ppiData.Rcheck\00_pkg_src\ppiData\chm\ppiData.chm


Compile time: 0 minutes, 0 seconds
28	Topics
55	Local links
1	Internet link
1	Graphic


Created d:\biocbld\bbs-2.0-data-experiment\meat\ppiData.Rcheck\00_pkg_src\ppiData\chm\ppiData.chm, 44,336 bytes
Compression decreased file by 42,048 bytes.
  adding MD5 sums

* DONE (ppiData)