Package: coRNAi

Version: 1.1.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch coRNAi_1.1.0.tar.gz

StartedAt: 2011-01-09 18:47:16 -0800 (Sun, 09 Jan 2011)

EndedAt: 2011-01-09 18:49:55 -0800 (Sun, 09 Jan 2011)

EllapsedTime: 159.1 seconds

RetCode: 0

Status:  OK

CheckDir: coRNAi.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/coRNAi.Rcheck’
* using R version 2.13.0 Under development (unstable) (2010-11-28 r53696)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘coRNAi/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘coRNAi’ version ‘1.1.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘coRNAi’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘coRNAi’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: RColorBrewer
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (coRNAi)

name	user	system	elapsed
BoxPlotShorth	0.618	0.028	0.697
InteractGraph	0.001	0.000	0.000
InteractLevelPlot	0.556	0.019	0.635
MainFitPlot	0.032	0.001	0.035
PlotHeatmap	0.560	0.017	0.633
Pplot	0.005	0.000	0.005
cellHTS2df	0.298	0.018	0.365
cortestmatrices	12.445	0.060	13.551
data2graph	0	0	0
df2array	0.422	0.022	0.508
df2fitmatrix	0.813	0.051	0.901
df2lmFit	0.564	0.046	0.636
estmodel	0.582	0.025	0.620
faultyscreen	0.106	0.005	0.113
interactiontable	0.027	0.001	0.029
key	0.004	0.001	0.005
repplots	8.057	0.926	9.291
rlmmain	0.550	0.081	0.663
screen1_raw	0.014	0.001	0.017
screen2_raw	0.139	0.004	0.145
signalplots	0.616	0.022	0.645
tt2matrix	0.002	0.000	0.003
updateDf	0.308	0.037	0.529
weightDf	0.282	0.017	0.301