| Back to Build/check report for BioC 3.16 experimental data | 
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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| To the developers/maintainers of the JASPAR2014 package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 194/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| JASPAR2014 1.34.0  (landing page) Ge Tan 
 | nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS |  | |||||||
| Package: JASPAR2014 | 
| Version: 1.34.0 | 
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:JASPAR2014.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings JASPAR2014_1.34.0.tar.gz | 
| StartedAt: 2023-04-11 11:55:13 -0400 (Tue, 11 Apr 2023) | 
| EndedAt: 2023-04-11 11:56:29 -0400 (Tue, 11 Apr 2023) | 
| EllapsedTime: 75.7 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: JASPAR2014.Rcheck | 
| Warnings: 1 | 
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### Running command:
###
###   /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:JASPAR2014.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings JASPAR2014_1.34.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/JASPAR2014.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘JASPAR2014/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘JASPAR2014’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘JASPAR2014’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 70.0Mb
  sub-directories of 1Mb or more:
    data     49.5Mb
    extdata  20.3Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 49.5 MB without LazyDataCompression set
  See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.16-data-experiment/meat/JASPAR2014.Rcheck/00check.log’
for details.
JASPAR2014.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL JASPAR2014 ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘JASPAR2014’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (JASPAR2014)
JASPAR2014.Rcheck/JASPAR2014-Ex.timings
| name | user | system | elapsed | |
| JASPAR2014-class | 0 | 0 | 0 | |
| JASPAR2014-package | 0.000 | 0.000 | 0.001 | |
| JASPAR2014SitesSeqs | 0 | 0 | 0 | |