Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2023-11-14 11:35:14 -0500 (Tue, 14 Nov 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | R Under development (unstable) (2023-10-22 r85388) -- "Unsuffered Consequences" | 4604 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-10-23 r85389 ucrt) -- "Unsuffered Consequences" | 4358 |
merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2023-10-31 r85450) -- "Unsuffered Consequences" | 4353 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2023-11-01 r85459) -- "Unsuffered Consequences" | 4237 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 435/2221 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
CoSIA 1.3.0 (landing page) Amanda D. Clark
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | TIMEOUT | skipped | ||||||||||
To the developers/maintainers of the CoSIA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CoSIA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: CoSIA |
Version: 1.3.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:CoSIA.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings CoSIA_1.3.0.tar.gz |
StartedAt: 2023-11-13 20:36:08 -0500 (Mon, 13 Nov 2023) |
EndedAt: 2023-11-13 20:53:41 -0500 (Mon, 13 Nov 2023) |
EllapsedTime: 1052.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: CoSIA.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:CoSIA.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings CoSIA_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/CoSIA.Rcheck’ * using R Under development (unstable) (2023-10-22 r85388) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.3 LTS * using session charset: UTF-8 * checking for file ‘CoSIA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘CoSIA’ version ‘1.3.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘CoSIA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plotCVGEx-CoSIAn-method 119.721 14.199 134.715 plotCVGEx 95.088 17.315 113.195 plotDSGEx-CoSIAn-method 26.326 3.820 30.485 getGEx-CoSIAn-method 26.689 2.424 31.647 getTissues 24.137 1.864 26.293 plotDSGEx 19.704 1.160 21.217 plotSpeciesGEx 17.090 1.367 18.844 plotSpeciesGEx-CoSIAn-method 15.849 0.956 17.205 plotTissueGEx-CoSIAn-method 15.687 0.980 17.004 plotTissueGEx 15.676 0.940 16.942 getGExMetrics-CoSIAn-method 7.866 0.692 8.919 getGExMetrics 6.990 0.651 8.061 getGEx 4.932 0.468 5.789 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘CoSIA_Intro.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
CoSIA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL CoSIA ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘CoSIA’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CoSIA)
CoSIA.Rcheck/CoSIA-Ex.timings
name | user | system | elapsed | |
CoSIA-constructor | 0.003 | 0.000 | 0.004 | |
getConversion-CoSIAn-method | 3.726 | 0.195 | 3.931 | |
getConversion | 2.403 | 0.024 | 2.428 | |
getGEx-CoSIAn-method | 26.689 | 2.424 | 31.647 | |
getGEx | 4.932 | 0.468 | 5.789 | |
getGExMetrics-CoSIAn-method | 7.866 | 0.692 | 8.919 | |
getGExMetrics | 6.990 | 0.651 | 8.061 | |
getTissues | 24.137 | 1.864 | 26.293 | |
plotCVGEx-CoSIAn-method | 119.721 | 14.199 | 134.715 | |
plotCVGEx | 95.088 | 17.315 | 113.195 | |
plotDSGEx-CoSIAn-method | 26.326 | 3.820 | 30.485 | |
plotDSGEx | 19.704 | 1.160 | 21.217 | |
plotSpeciesGEx-CoSIAn-method | 15.849 | 0.956 | 17.205 | |
plotSpeciesGEx | 17.090 | 1.367 | 18.844 | |
plotTissueGEx-CoSIAn-method | 15.687 | 0.980 | 17.004 | |
plotTissueGEx | 15.676 | 0.940 | 16.942 | |
viewCoSIAn-CoSIAn-method | 0.002 | 0.000 | 0.002 | |
viewCoSIAn | 0.002 | 0.000 | 0.002 | |