Mustafa Erhan Ozer
| Snapshot Date: 2024-03-01 14:00:22 -0500 (Fri, 01 Mar 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: 822a88a |
| git_last_commit_date: 2024-01-08 13:31:35 -0500 (Mon, 08 Jan 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-03-04 11:40:02 -0500 (Mon, 04 Mar 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4676 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" | 4414 |
| merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4441 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" | 4417 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2068/2251 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.3.0 (landing page) Mustafa Erhan Ozer
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.3.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.3.0.tar.gz |
| StartedAt: 2024-03-02 11:30:35 -0500 (Sat, 02 Mar 2024) |
| EndedAt: 2024-03-02 11:41:00 -0500 (Sat, 02 Mar 2024) |
| EllapsedTime: 625.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings SVMDO_1.3.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/SVMDO.Rcheck’
* using R Under development (unstable) (2024-01-16 r85808)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.3.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 1281,3502,10891,158,4214,292
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6657,10116,9722,364,3673,3952
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 215,821,11231,55630,10295,26191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51300,8856,10991,5742,2949,23576
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4149,2678,4018,57761,5277,1146
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2997,80270,5925,29843,1244,308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1428,3098,2805,5139,7172,6524
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2305,54575,57017,4323,55065,10497
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5644,5770,8228,55600,4060,359
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4718,952,23530,186,5087,3074
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1968,7424,2934,119559,7827,123263
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1345,3663,3691,3034,4040,3426
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4055,759,3101,2932,256471,4521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5697,5139,1175,5586,3558,2934
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29078,79934,407009,80222,27089,10221
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4773,7431,642489,6564,2348,5207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 123099,728294,3636,100125288,7507,5364
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55243,3439,25821,29929,5108,338557
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4915,4976,84334,148738,8802,55829
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4208,6389,56623,10549,4049,5228
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4547,212,8431,2587,1543,114548
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1806,1559,4715,9927,148713,54210
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2785,387082,23446,9945,81570,8722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406903,2119,9370,5321,477,23600
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54809,2222,821,118,517,1442
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23395,27429,1146,10686,5465,8722
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10991,5255,50674,51738,2785,5055
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2137,2946,51293,10165,79934,3483
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 80207,5726,4489,43,1146,4089
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79783,5830,1591,6514,1191,4041
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2778,432369,3350,84902,790955,728441
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10060,9311,1147,5228,2271,6555
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2688,80309,2495,2990,427,3350
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79572,9507,170392,51004,7385,5901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9370,2852,199,7471,121268,10628
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3501,796,23054,84701,10229,55788
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1409,2948,3990,54796,64102,5830
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1056,2934,1678,6659,11096,7049
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3382,249,4976,9370,8675,23530
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3033,3483,4586,33,112817,8029
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55699,2593,5250,23365,79585,255308
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 57104,1337,6659,657,376497,6007
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26873,2587,10886,55788,51128,9868
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1489,253827,55748,51422,3155,3316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,635,10745,948,7386,3316
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338,6517,3593,6616,23576,5506
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9945,105372280,652,3980,793,4669
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55885,2937,1508,875,55315,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27429,5243,27089,65993,1544,2641
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1608,8784,55644,406,255231,7200
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6566,100128525,28234,6248,387,326625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6199,4536,5601,79949,2683,2034
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 29947,54658,1033,6524,164656,64241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4232,27344,8660,868,26873,5241
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51117,7048,5919,6564,51601,348
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2321,6932,79783,776,55805,440138
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10243,28951,100126861,3507,8504,345
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 494324,28976,4852,8202,4887,55644
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2203,55768,54658,4654,8764,23054
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338821,156,1869,3833,726,3162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5228,8803,3503,1672,55526,3290
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6530,9382,2695,50484,948,148713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5370,3062,2260,5551,572,1806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54982,11093,5328,821,3664,3385
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3684,5824,4060,797,3099,493753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8309,10560,5365,8835,1869,35
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5743,81034,1807,3073,929,7321
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5095,7295,3559,1910,6888,493753
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2591,3685,51300,2119,1347,6523
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27035,257313,293,5409,6888,4208
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8431,5798,57761,383,361,410
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6289,2954,2683,776,7355,160287
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54539,2588,8517,1893,4091,10857
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 347,9572,5329,51703,175,6531
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1371,7076,100303755,1806,3762,818
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3708,5745,6821,1052,582,7275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4828,3570,2632,57017,387082,64087
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 940,57215,55816,9314,7839,2646
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2395,8228,1277,164656,3949,5506
--> return NULL...
2024-03-02 11:40:44.990 R[75992:986106519] XType: com.apple.fonts is not accessible.
2024-03-02 11:40:44.991 R[75992:986106519] XType: XTFontStaticRegistry is enabled.
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
89.636 2.492 107.087
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 1.261 | 0.047 | 1.654 | |