Multiple platform build/check report for BioC 3.23 - CHECK results for graper on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4827
lconway	macOS 12.7.6 Monterey	x86_64	R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences"	4600
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"	4564
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on nebbiolo1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.27.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz

StartedAt: 2025-11-19 00:59:19 -0500 (Wed, 19 Nov 2025)

EndedAt: 2025-11-19 01:00:50 -0500 (Wed, 19 Nov 2025)

EllapsedTime: 91.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings graper_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.27.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... INFO
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.23-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.23-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** this is package ‘graper’ version ‘1.27.0’
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.23-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.23-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall -Werror=format-security  -c fit_graper.cpp -o fit_graper.o
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.23-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.23-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.23-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.23-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-858.895
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-583.537
ELB improved by 275.358

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-525.458
ELB improved by 58.0792

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.173
ELB improved by 37.285

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-470.776
ELB improved by 17.3966

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.731
ELB improved by 8.04558

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.923
ELB improved by 4.80792

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.312
ELB improved by 3.61039

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.203
ELB improved by 3.10897

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.396
ELB improved by 2.80752

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.86
ELB improved by 2.53596

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.624
ELB improved by 2.23528

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.727
ELB improved by 1.89721

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.182
ELB improved by 1.54537

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.965
ELB improved by 1.21722

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.024
ELB improved by 0.941065

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.299
ELB improved by 0.725072

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.735
ELB improved by 0.563744

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.288
ELB improved by 0.447221

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.922
ELB improved by 0.365314

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.614
ELB improved by 0.308657

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.344
ELB improved by 0.269423

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.102
ELB improved by 0.241749

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.881
ELB improved by 0.221634

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.674
ELB improved by 0.206514

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.48
ELB improved by 0.194796

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.294
ELB improved by 0.185496

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.116
ELB improved by 0.178004

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.944
ELB improved by 0.17194

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.777
ELB improved by 0.167071

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.614
ELB improved by 0.163273

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.453
ELB improved by 0.160501

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.294
ELB improved by 0.158783

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.136
ELB improved by 0.158212

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.977
ELB improved by 0.158956

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.816
ELB improved by 0.16126

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.651
ELB improved by 0.165463

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.479
ELB improved by 0.172013

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.297
ELB improved by 0.181495

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.102
ELB improved by 0.194657

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.89
ELB improved by 0.212445

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.654
ELB improved by 0.236029

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.387
ELB improved by 0.266826

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.081
ELB improved by 0.306474

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.724
ELB improved by 0.356736

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.305
ELB improved by 0.419242

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.81
ELB improved by 0.49491

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.227
ELB improved by 0.582681

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.55
ELB improved by 0.676946

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.786
ELB improved by 0.763782

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.965
ELB improved by 0.820812

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.137
ELB improved by 0.828844

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.35
ELB improved by 0.786775

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.641
ELB improved by 0.709289

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.026
ELB improved by 0.61428

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.51
ELB improved by 0.516324

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.085
ELB improved by 0.425296

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.739
ELB improved by 0.345788

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.461
ELB improved by 0.278067

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.24
ELB improved by 0.220918

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.066
ELB improved by 0.173646

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.93
ELB improved by 0.135873

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.824
ELB improved by 0.106699

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.739
ELB improved by 0.084636

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.671
ELB improved by 0.0680538

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.615
ELB improved by 0.0555356

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.569
ELB improved by 0.0459909

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.531
ELB improved by 0.038628

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.498
ELB improved by 0.0328853

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.47
ELB improved by 0.0283646

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.445
ELB improved by 0.0247813

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.423
ELB improved by 0.0219292

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.403
ELB improved by 0.0196571

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.385
ELB improved by 0.0178535

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.369
ELB improved by 0.0164353

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.354
ELB improved by 0.0153408

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.339
ELB improved by 0.0145231

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.325
ELB improved by 0.0139453

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.312
ELB improved by 0.0135743

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.298
ELB improved by 0.0133748

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.285
ELB improved by 0.0133021

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.272
ELB improved by 0.0132935

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.258
ELB improved by 0.0132644

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.245
ELB improved by 0.0131112

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.232
ELB improved by 0.0127298

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.22
ELB improved by 0.0120485

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.209
ELB improved by 0.0110626

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.2
ELB improved by 0.00984848

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-882.534
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584.637
ELB improved by 297.897

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-523.822
ELB improved by 60.8145

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-483.254
ELB improved by 40.5681

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.973
ELB improved by 17.2806

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-458.486
ELB improved by 7.48707

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.493
ELB improved by 4.99299

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.836
ELB improved by 4.65711

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.848
ELB improved by 4.98779

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.538
ELB improved by 5.31051

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.509
ELB improved by 5.02865

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.557
ELB improved by 3.9524

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.931
ELB improved by 2.62555

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.301
ELB improved by 1.6305

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.247
ELB improved by 1.05371

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.507
ELB improved by 0.739628

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.951
ELB improved by 0.556586

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.512
ELB improved by 0.438538

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.155
ELB improved by 0.35708

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.856
ELB improved by 0.298977

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.6
ELB improved by 0.256584

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.375
ELB improved by 0.224733

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.175
ELB improved by 0.199714

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.996
ELB improved by 0.17885

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.836
ELB improved by 0.160384

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.692
ELB improved by 0.143518

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.564
ELB improved by 0.12831

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.449
ELB improved by 0.115254

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.344
ELB improved by 0.104742

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.247
ELB improved by 0.096775

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.156
ELB improved by 0.0910215

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.069
ELB improved by 0.0870308

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.985
ELB improved by 0.0843973

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.902
ELB improved by 0.0828225

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.82
ELB improved by 0.0821094

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.738
ELB improved by 0.0821353

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.655
ELB improved by 0.0828253

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.571
ELB improved by 0.0841344

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.485
ELB improved by 0.0860365

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.396
ELB improved by 0.0885181

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.305
ELB improved by 0.0915755

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.21
ELB improved by 0.0952135

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.11
ELB improved by 0.0994461

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.006
ELB improved by 0.104298

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.896
ELB improved by 0.109807

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.78
ELB improved by 0.11603

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.657
ELB improved by 0.123051

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.526
ELB improved by 0.130989

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.386
ELB improved by 0.140015

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.236
ELB improved by 0.150367

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.073
ELB improved by 0.162366

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.897
ELB improved by 0.176406

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.704
ELB improved by 0.19287

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.492
ELB improved by 0.211879

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.259
ELB improved by 0.232835

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.005
ELB improved by 0.253995

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.732
ELB improved by 0.272882

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.444
ELB improved by 0.287863

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.145
ELB improved by 0.299513

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.835
ELB improved by 0.310287

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.511
ELB improved by 0.323384

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.17
ELB improved by 0.341429

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.807
ELB improved by 0.363043

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.43
ELB improved by 0.376826

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.066
ELB improved by 0.364007

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.747
ELB improved by 0.319372

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.488
ELB improved by 0.258994

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.287
ELB improved by 0.200597

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.135
ELB improved by 0.152333

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.019
ELB improved by 0.11547

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.931
ELB improved by 0.0884427

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.862
ELB improved by 0.0690105

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.807
ELB improved by 0.0551317

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.761
ELB improved by 0.0452013

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.723
ELB improved by 0.0380405

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.691
ELB improved by 0.0328134

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.662
ELB improved by 0.0289382

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.636
ELB improved by 0.0260139

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.612
ELB improved by 0.0237661

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.59
ELB improved by 0.0220082

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.569
ELB improved by 0.0206133

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.55
ELB improved by 0.0194965

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.531
ELB improved by 0.0186013

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.513
ELB improved by 0.0178911

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.496
ELB improved by 0.0173439

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.479
ELB improved by 0.0169475

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.462
ELB improved by 0.0166982

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.446
ELB improved by 0.0165991

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.429
ELB improved by 0.0166593

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.412
ELB improved by 0.0168945

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.395
ELB improved by 0.0173272

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.377
ELB improved by 0.0179875

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.358
ELB improved by 0.0189152

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.338
ELB improved by 0.0201614

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.316
ELB improved by 0.0217937

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.292
ELB improved by 0.0239021

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.265
ELB improved by 0.0266099

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.235
ELB improved by 0.0300836

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.201
ELB improved by 0.0345382

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.161
ELB improved by 0.040218

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.113
ELB improved by 0.0473416

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.057
ELB improved by 0.0560296

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.991
ELB improved by 0.0663218

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.912
ELB improved by 0.0784155

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.82
ELB improved by 0.0928404

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.71
ELB improved by 0.109197

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.588
ELB improved by 0.122572

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.464
ELB improved by 0.123639

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.354
ELB improved by 0.109731

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.264
ELB improved by 0.090181

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.19
ELB improved by 0.0746392

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.124
ELB improved by 0.0659774

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.061
ELB improved by 0.0629697

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.997
ELB improved by 0.0632871

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.933
ELB improved by 0.0645644

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.868
ELB improved by 0.064912

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.805
ELB improved by 0.0633678

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.745
ELB improved by 0.059794

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.69
ELB improved by 0.0542732

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.644
ELB improved by 0.046923

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.605
ELB improved by 0.0383081

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.576
ELB improved by 0.0295634

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.554
ELB improved by 0.0218508

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.538
ELB improved by 0.0157953

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.527
ELB improved by 0.0114215

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.518
ELB improved by 0.00842136

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-875.646
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-558.849
ELB improved by 316.797

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-500.862
ELB improved by 57.9877

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.87
ELB improved by 33.9913

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.002
ELB improved by 14.868

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.514
ELB improved by 6.48809

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.455
ELB improved by 4.05937

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.164
ELB improved by 3.29051

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.172
ELB improved by 2.9922

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.298
ELB improved by 2.87406

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.456
ELB improved by 2.84199

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.593
ELB improved by 2.86265

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.685
ELB improved by 2.90792

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.757
ELB improved by 2.92846

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.905
ELB improved by 2.85235

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.283
ELB improved by 2.62163

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.041
ELB improved by 2.24215

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.265
ELB improved by 1.77594

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.955
ELB improved by 1.3104

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.999
ELB improved by 0.955862

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.259
ELB improved by 0.7401

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.671
ELB improved by 0.58734

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.215
ELB improved by 0.456362

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.849
ELB improved by 0.365602

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.534
ELB improved by 0.315041

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.245
ELB improved by 0.289628

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.966
ELB improved by 0.278328

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.691
ELB improved by 0.275157

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.414
ELB improved by 0.276777

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.133
ELB improved by 0.281087

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.847
ELB improved by 0.286625

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.554
ELB improved by 0.292356

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.257
ELB improved by 0.297593

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.955
ELB improved by 0.301983

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.649
ELB improved by 0.305497

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.341
ELB improved by 0.308384

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.03
ELB improved by 0.311091

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.716
ELB improved by 0.314145

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.398
ELB improved by 0.318043

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.074
ELB improved by 0.323165

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.745
ELB improved by 0.329738

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.407
ELB improved by 0.337853

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.059
ELB improved by 0.347526

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.7
ELB improved by 0.358792

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.329
ELB improved by 0.371801

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.942
ELB improved by 0.386787

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.538
ELB improved by 0.403602

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.118
ELB improved by 0.420344

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.687
ELB improved by 0.431243

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.26
ELB improved by 0.426886

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.859
ELB improved by 0.400889

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.502
ELB improved by 0.357199

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.195
ELB improved by 0.306269

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.939
ELB improved by 0.256331

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.728
ELB improved by 0.21127

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.555
ELB improved by 0.172495

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.415
ELB improved by 0.140285

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.301
ELB improved by 0.114293

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.207
ELB improved by 0.0937961

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.129
ELB improved by 0.0778874

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.063
ELB improved by 0.0656161

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.007
ELB improved by 0.0560819

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.959
ELB improved by 0.0485026

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.917
ELB improved by 0.0422702

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.88
ELB improved by 0.0369819

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.847
ELB improved by 0.0324251

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.819
ELB improved by 0.0285162

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.793
ELB improved by 0.025227

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.771
ELB improved by 0.022534

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.751
ELB improved by 0.0204027

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.732
ELB improved by 0.0187957

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.714
ELB improved by 0.0176905

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.697
ELB improved by 0.0171015

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.68
ELB improved by 0.0171087

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.662
ELB improved by 0.0179106

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.642
ELB improved by 0.0199325

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.618
ELB improved by 0.024069

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.586
ELB improved by 0.0322418

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.537
ELB improved by 0.0486486

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.455
ELB improved by 0.0820749

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.308
ELB improved by 0.146909

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.059
ELB improved by 0.249127

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.704
ELB improved by 0.355039

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.274
ELB improved by 0.429635

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.806
ELB improved by 0.468129

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.389
ELB improved by 0.417581

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.108
ELB improved by 0.280902

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.963
ELB improved by 0.145066

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.899
ELB improved by 0.0638508

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.871
ELB improved by 0.0281175

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.856
ELB improved by 0.0142353

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.848
ELB improved by 0.00882439

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-905.215
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-563.092
ELB improved by 342.122

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-506.519
ELB improved by 56.5739

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.671
ELB improved by 27.8473

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.28
ELB improved by 12.3912

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.998
ELB improved by 6.28215

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.465
ELB improved by 4.53253

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.292
ELB improved by 4.17309

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.051
ELB improved by 4.24131

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.657
ELB improved by 4.39348

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.296
ELB improved by 4.36179

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.332
ELB improved by 3.96353

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.085
ELB improved by 3.24747

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.659
ELB improved by 2.42588

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.968
ELB improved by 1.69104

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.825
ELB improved by 1.14269

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.039
ELB improved by 0.786201

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.468
ELB improved by 0.570871

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.026
ELB improved by 0.441598

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.666
ELB improved by 0.360477

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.36
ELB improved by 0.305629

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.095
ELB improved by 0.265084

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.863
ELB improved by 0.232415

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.658
ELB improved by 0.20445

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.478
ELB improved by 0.179985

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.32
ELB improved by 0.158765

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.179
ELB improved by 0.140719

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.053
ELB improved by 0.125641

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.94
ELB improved by 0.113174

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.837
ELB improved by 0.102906

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.743
ELB improved by 0.0944451

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.655
ELB improved by 0.0874541

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.574
ELB improved by 0.0816566

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.497
ELB improved by 0.0768338

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.424
ELB improved by 0.0728151

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.355
ELB improved by 0.069468

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.288
ELB improved by 0.0666896

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.223
ELB improved by 0.0643983

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.161
ELB improved by 0.062529

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.1
ELB improved by 0.0610279

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.04
ELB improved by 0.0598499

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.981
ELB improved by 0.0589555

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.923
ELB improved by 0.0583094

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.865
ELB improved by 0.0578789

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.807
ELB improved by 0.0576333

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.75
ELB improved by 0.0575439

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.692
ELB improved by 0.0575837

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.634
ELB improved by 0.0577287

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.576
ELB improved by 0.0579588

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.518
ELB improved by 0.058259

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.46
ELB improved by 0.0586211

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.4
ELB improved by 0.0590442

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.341
ELB improved by 0.0595356

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.281
ELB improved by 0.0601115

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.22
ELB improved by 0.0607968

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.158
ELB improved by 0.0616251

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.096
ELB improved by 0.0626392

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.032
ELB improved by 0.0638913

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.966
ELB improved by 0.0654435

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.899
ELB improved by 0.0673692

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.829
ELB improved by 0.0697551

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.757
ELB improved by 0.0727037

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.68
ELB improved by 0.0763371

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.599
ELB improved by 0.0808014

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.513
ELB improved by 0.0862733

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.42
ELB improved by 0.0929666

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.319
ELB improved by 0.101141

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.208
ELB improved by 0.111111

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.085
ELB improved by 0.123255

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.947
ELB improved by 0.138023

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.791
ELB improved by 0.155947

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.613
ELB improved by 0.177666

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.409
ELB improved by 0.203995

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.173
ELB improved by 0.236163

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.896
ELB improved by 0.276498

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.566
ELB improved by 0.330363

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.155
ELB improved by 0.411155

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.605
ELB improved by 0.549753

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.821
ELB improved by 0.784651

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.793
ELB improved by 1.02758

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.765
ELB improved by 1.02835

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.926
ELB improved by 0.838494

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.281
ELB improved by 0.645291

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.777
ELB improved by 0.503671

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.362
ELB improved by 0.415373

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.995
ELB improved by 0.36719

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.653
ELB improved by 0.341875

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.314
ELB improved by 0.338298

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.941
ELB improved by 0.373775

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.511
ELB improved by 0.429258

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.083
ELB improved by 0.428055

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.739
ELB improved by 0.344425

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.515
ELB improved by 0.224187

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.391
ELB improved by 0.123522

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.329
ELB improved by 0.0623828

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.298
ELB improved by 0.0312458

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.281
ELB improved by 0.0166276

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.271
ELB improved by 0.00992022

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.521   0.217   2.724

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.054	0.011	0.066
getPIPs	0.051	0.010	0.061
graper	0.079	0.021	0.100
makeExampleData	0.009	0.001	0.010
makeExampleDataWithUnequalGroups	0.012	0.001	0.013
plotELBO	0.335	0.019	0.353
plotGroupPenalties	1.062	0.060	1.122
plotPosterior	0.618	0.013	0.631
predict.graper	2.069	0.072	2.140
print.graper	0.049	0.014	0.063